YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3885921
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.88
Transmembrane Helix	7	25	0.94
Non-Cytoplasmic	26	52	0.88
Transmembrane Helix	53	76	0.89
Cytoplasmic	77	85	0.75
Transmembrane Helix	86	108	0.83
Non-Cytoplasmic	109	119	0.79
Transmembrane Helix	120	144	0.87
Cytoplasmic	145	151	0.93
Transmembrane Helix	152	176	0.90
Non-Cytoplasmic	177	190	0.87
Transmembrane Helix	191	212	0.93
Cytoplasmic	213	224	0.84
Transmembrane Helix	225	248	0.88
Non-Cytoplasmic	249	271	0.90
Transmembrane Helix	272	293	0.90
Cytoplasmic	294	306	0.82
Transmembrane Helix	307	329	0.77
Non-Cytoplasmic	330	340	0.74
Transmembrane Helix	341	360	0.91
Cytoplasmic	361	375	0.71
Transmembrane Helix	376	399	0.84
Non-Cytoplasmic	400	415	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINEIIMYI MMFFMLIAAV DRILSQFGGS ARFLGKFGKS IEGSGGQFEE GFMAMGALGL  60
   61 AMVGMTAGAG VAHVLGPVII PVYEMLGANP SMFAGTLLAC DMGGFFLAKE LAGGDVAAWL 120
  121 YSGLILGSMM GPTIVFSIPV ALGIIEPSDR RYLALGVLAG IVTIPIGCIA GGLIAMYSGV 180
  181 QINGQPVEFT FALILMNMIP VLIVAVLVAL GLKFIPEKMI NGFQIFAKFL VALITIGLAA 240
  241 AVVKFLLGWE LIPGLDPIFM APGDKPGEVM RAIEVIGSIS CVLLGAYPMV LLLTRWFEKP 300
  301 LMNVGKLLNV NNIAAAGMVA TLANNIPMFG MMKQMDTRGK VINCAFAVSA AFALGDHLGF 360
  361 AAGRPFRLRA ANMNAMIFPM IVGKLIGGVT AIGVAMMLVP KDDGAQVKTE AEAQS