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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PLOD2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRGVRLGL LMPMLALLSW AASLGVAEET PSRIPADKLL VITVATKEND GFHRFMNSAK  60
   61 YFNYTVKVLG QGQEWRGGDG MNSIGGGQKV RLMKEAMEHY AGQDDLVILF TECFDVIFAG 120
  121 GPEELLKKFQ KTNHKIVFAA DALLWPDKRL ADKYPGVHIG KRYLNSGGFI GYAPYISRLV 180
  181 QQWNLQDNDD DQLFYTKVYI DPLKREALNI TLDHRCKIFQ ALNGATDEVV LKFENGKSRV 240
  241 KNTFYETLPV AINGNGPSKI LLNYFGNYVP NSWTQENGCA LCDFDASDLS TVDVYPKVTL 300
  301 GVFIEQPTPF QPRFLDLLLT LDYPKEALRL FVHNKEVYHE KDIKAFVDKA KHDISSIKIV 360
  361 GPEENLSQAE ARNMGMDFCR QDEKCDYYFS VDADVVLTNP RTLKILIEQN RKIIAPLVTR 420
  421 HGKLWSNFWG ALSPDGYYAR SEDYVDIVQG NRVGIWNVPY MANVYLIQGK TLRSEMSERN 480
  481 YFVRDKLDPD MSLCRNARDM GVFMYISNRH EFGRLISTAN YNTSHLNNDL WQIFENPVDW 540
  541 KEKYINRDYS KIFTENIVEQ PCPDVFWFPI FSERACDELV EEMEHYGKWS GGKHHDSRIS 600
  601 GGYENVPTDD IHMKQIDLEN VWLHFIREFI APVTLKVFAG YYTKGFALLN FVVKYSPERQ 660
  661 RSLRPHHDAS TFTINIALNN VGEDFQGGGC KFLRYNCSIE SPRKGWSFMH PGRLTHLHEG 720
  721 LPVKNGTRYI AVSFIDP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle