YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14718995
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAALDPVDW LLFSLSKAFR SPLAVFVQIQ GCVICLTLAI GWAFAAYVRN REINRMKDAM  60
   61 KCGNSFAFLC HDINELEHTN QVNLPRVTVV MPLKGFGEHN LHNWKSQITS LYGGPLEFLF 120
  121 VVESTEDPAY HAVSRLIRDF KDDVDAKIIV AGLSTTCSQK IHNQLVGVER MHKDTKYVLF 180
  181 LDDDVRLHPG SIGALTAEME KNPEIFIQTG YPLDLPSGSL GSYCIYEYHM PCSMGFATGG 240
  241 KTFFLWGGCM MMQADDFRRD NYGVVSGLRD GGYSDDMTLA AIAGAHKRLI TSPPVAVFPH 300
  301 PLASDLSFSR YWNYLRKQTF VLESYISRVN WLMNRGLFSF HCYLSWGFVA PYFMAAVHIA 360
  361 AALQIYIKGY SYEETTCTTS GLLLASCLAI CTLTELLSMW NLTRIEVQLC NMLSPEAPKL 420
  421 SLDYYNWSLI FVALLVDNFL YPISAFRSHF SQSINWSGIR YHLKNGKINK IERNKGRGPK 480
  481 FTDLGGKHLY GKKGAPPKAS FLSSLARSLC QWHQPKKYEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.80
Transmembrane Helix	24	46	0.90
Cytoplasmic	47	339	0.85
Transmembrane Helix	340	362	0.87
Non-Cytoplasmic	363	380	0.73
Transmembrane Helix	381	403	0.85
Cytoplasmic	404	423	0.81
Transmembrane Helix	424	445	0.81
Non-Cytoplasmic	446	520	0.77