YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6594636
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARWFYDCGFD GYVKEETKTE KLLSHLNIQA ENASMPANLS SISFHFQTRS LAYEQTSSLL  60
   61 QTRMHMMMHW RDSRLVWKPE DFGSLESFEH PDLRIWKPHM NVLNGALQSM GQVLQSYELM 120
  121 VYANGSITLY AQNLQLASWC VDSARNWPSE RVTCDIELGL NGQEGQENVA LIYDDQRKPI 180
  181 APNEHVNTPS GWSFTQMSVV LVENDSQRRY NPKGMMQKMT GDVAIEFTLQ RNRSFYMTVF 240
  241 YLPLIACQMF LILSFVLRST RRSSLILIAL LIAAWGLMYM TRYASPHYVP PMMTAYKVIM 300
  301 MTTTYCYILH ICIIWLDLYP PRSKAPGWLV RVINSNVLRC ILGLRFSDST DYCDIQENPW 360
  361 HHMAKILNNL SSILVIITFA IVDITSGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	234	0.97
Transmembrane Helix	235	257	0.91
Cytoplasmic	258	263	0.89
Transmembrane Helix	264	283	0.93
Non-Cytoplasmic	284	297	0.75
Transmembrane Helix	298	319	0.88
Cytoplasmic	320	365	0.91
Transmembrane Helix	366	386	0.84
Non-Cytoplasmic	387	388	0.72