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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60469439, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNYLFLLI IFFTFILKCN SQTKPLPSDQ MEMAKDLYYQ IYQKNTTDPC LDNNMFTCKL  60
   61 INDGVNTGIY TITQLGLKKN NDTLSIITNA NFSVFKNATY ILIGDGIILD SSLFNTLPNF 120
  121 YNKASIYIYN ESIPIPNDII IPINLNQVTF TFINVPIPSN IFSGSIEVFN ILGIGYGFSL 180
  181 PSLLPENVAL KRFSTFLGYY SPFPSNAGSA LKSLTSLRLS FNNDITEIGY KNYSFPTFQP 240
  241 FNKLQTLYIT FINFGDDSNS QLWNFEQSIT NLTTLNDFHI TGKGFILNPS FKYTDFSNLP 300
  301 ETFFIYFSNG CDLISNCISK PCLKLPKKSG ISVIGCDFNI KNIDFTNVTY MKMQNNDFEQ 360
  361 ELPTNEGGDS SNINYSTTRL DFQDNVLIGS IPEGYCQFYK SKYPTLSYNE LTGEIPTCFS 420
  421 CMGANYTITK NLLPNQFTDF NEKSLPTNCE TFNFSLDYNK IVKTDGSTII TIKGKDFGWD 480
  481 FSLPSGNNDN VTLLITIPNN EITLSIPKGE GSNKTFIANF GYQFKFSQTF TYSYEIPVIT 540
  541 SYSFGNDSKF YLNGNGFSFI NNNSITLNGV SYKFTIATAD EQPSGNGYSS SISFIDDGGE 600
  601 INNPIDSMLI GDEFNVSINV GNQVSNIVTF YLYKSISISS LSNNKLNISG SSSLVTVTFD 660
  661 GEFGTTNSKI VFVSINGIQC IVKSVTPQSL TISSYPSVPS VGKYQISINV GGLIFTDQIE 720
  721 YIKTPTTTNT TSSEENGHDG SFGSLSSQPI SLLSLIILSI ISLITLPK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle