YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13898376
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASQYLSAL TFVLLLFKES RTWSYHASKE NMTFEEARDY CQKTYTALVA IQNQEEIKYL  60
   61 NSTFSHSPSY YWIGIRKIND IWTWIGTNKS LTKEATNWAP GEPNNKQSDE DCVEIYIKRE 120
  121 KDSGKWNDER CTKRKLALCY KAACTPTPCS SHGECVETIN NYTCQCHPGF KGLKCEQVVT 180
  181 CQAQKHPEHG HLVCNPLGKF SYNSSCSVSC AEGYLPSSTE ATRCTSSGEW SAPLPTCNVV 240
  241 KCDALSNPDN GAVNCSQNHG SLPWNTTCTF ECQEGYKLSG PQHLQCTSSG IWDNKQPTCK 300
  301 AVTCAAISHP QNGTVNCSRS SAGEFAFKSS CHFACAEGFV LQGPPQVECT APGQWTQQVP 360
  361 VCEVVRCSRL EVSGKLSMNC SGEPMLGTEC RFACPERWTL NGSVVLTCGA TGHWSGMLPT 420
  421 CEAPTVSQTP LAVGLSTAGV SLVTIPSFFF WLLKRLRKKA KKFSPTSSCS SLKSDGCYPA 480
  481 PSELI

Type	Start	End	Confidence
Signal Peptide	1	24	0.89
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	431	0.98
Transmembrane Helix	432	453	0.94
Cytoplasmic	454	485	0.98