YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12642648
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	27	0.81
Cytoplasmic	28	44	0.86
Transmembrane Helix	45	65	0.90
Non-Cytoplasmic	66	73	0.71
Transmembrane Helix	74	94	0.88
Cytoplasmic	95	101	0.79
Transmembrane Helix	102	121	0.87
Non-Cytoplasmic	122	133	0.81
Transmembrane Helix	134	154	0.89
Cytoplasmic	155	161	0.71
Transmembrane Helix	162	182	0.93
Non-Cytoplasmic	183	187	0.78
Transmembrane Helix	188	207	0.95
Cytoplasmic	208	213	0.80
Transmembrane Helix	214	233	0.90
Non-Cytoplasmic	234	240	0.72
Transmembrane Helix	241	261	0.94
Cytoplasmic	262	294	0.91
Transmembrane Helix	295	314	0.92
Non-Cytoplasmic	315	319	0.65
Transmembrane Helix	320	341	0.88
Cytoplasmic	342	399	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKIIVDLFL LVIIQVAITP FIRRLAFVLG AVDNPNARRV NKKPMPTIGG LGIFVTYNIG  60
   61 TFILLREQFP THELFALLLA SSVIVLTGMI DDILELKPGQ KMGGIFIAAM ITYFLAEIRM 120
  121 TELNIPFTGQ TINLPWYLSL PITIFWILAL TNAVNLIDGL DGLAAGVSCI SLLTMGIVGY 180
  181 FFLRNQGLYV PIACLMLAAC LLGFLPYNFN PAKIFLGDTG ALYLGFMISV LALKGLKNVT 240
  241 FISLLVPVII LGVPISDTVY AMIRRKLNKK PISQADKHHL HHQLMNLGLT QRQTVLVIYA 300
  301 LSLIFSFVSM LFLLSPIWAM VLLLVGLLIA VELFVESIGL LGEKYKPLSH LINRLVLHST 360
  361 HTKEPDVEVW HQGEAKPRKW QERSKGGHKP AEKNSGKKQ