YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16197901
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	24	0.66
Non-Cytoplasmic	25	32	0.82
Transmembrane Helix	33	56	0.90
Cytoplasmic	57	64	0.91
Transmembrane Helix	65	89	0.84
Non-Cytoplasmic	90	124	0.89
Transmembrane Helix	125	145	0.91
Cytoplasmic	146	182	0.91
Transmembrane Helix	183	202	0.94
Non-Cytoplasmic	203	221	0.70
Transmembrane Helix	222	238	0.72
Cytoplasmic	239	249	0.65
Transmembrane Helix	250	269	0.72
Non-Cytoplasmic	270	351	0.59
Transmembrane Helix	352	381	0.80
Cytoplasmic	382	477	0.58
Transmembrane Helix	478	500	0.89
Non-Cytoplasmic	501	523	0.73
Transmembrane Helix	524	546	0.79
Cytoplasmic	547	564	0.92
Transmembrane Helix	565	589	0.83
Non-Cytoplasmic	590	606	0.79
Transmembrane Helix	607	628	0.91
Cytoplasmic	629	700	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIFTFAFCP YCVGNFILSS MDLLQPEKPL LHFHGLITTL FGYCCIGLTL VVLHFFSRVF  60
   61 RLRRVCWFIG LCYIVVKVSL LSVLEIGVLP LICGWWLDIC SLPLLDASLK DRKESFKAAP 120
  121 GTSLFVHWMF GMVYVYYFAA FVSLLREVLR PGVLWIFRNV NDPDFSPIQE MIHVPIVRHI 180
  181 RRLVASAMIF GFAVLLMLWL PIRILQVVCP DFLPYALSGD SAVNLQLLLL QIVLPGFFEQ 240
  241 TQTRIWLKGL LRIWCTAVAW LLGIRSYLLP APEPEPEIPA AGEEGVENAA GENENQEGEA 300
  301 ADAAAQPPAP PPPPPPPVEP APAPRNLAAA HQAIMQRDAP VGFQPYDKPS LFALRLCALL 360
  361 ALMCLSIVCA AMLTLTVPVY IGRRLMLIWS SQPDEKAAGA AAAEGAGEVV ENLDPIDPEG 420
  421 ARKNERLLRS HELYTAELGG YLCWIVCRVV AAVVTLLPQG RAAIVDKIKH WVRVALQYAL 480
  481 PVLTLLGIIV LVPLLIGLLI ELAVVIPLRV PLRKTPIHFL WEDWALGVLY CKIAIALTMM 540
  541 GPDWHLKRAL DRAYMDGLRD FDLKFVMRDL AVPVVTTIGL ALAIPYVMAH MMFPIFLADA 600
  601 YAQHVVARLV YPVSFIVVGS ICILLFQIDQ LKKLYLSIKV DKYLVGQRLV NYEHRKKQQQ 660
  661 QQEEEKEQQR AARELRENQE RDREREREQL VQELELAELL