YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46394982
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.98
Transmembrane Helix	49	70	0.93
Non-Cytoplasmic	71	118	0.95
Transmembrane Helix	119	141	0.90
Cytoplasmic	142	191	0.96
Transmembrane Helix	192	211	0.89
Non-Cytoplasmic	212	217	0.71
Transmembrane Helix	218	238	0.93
Cytoplasmic	239	294	0.95
Transmembrane Helix	295	316	0.92
Non-Cytoplasmic	317	327	0.83
Transmembrane Helix	328	351	0.82
Cytoplasmic	352	709	0.95
Transmembrane Helix	710	731	0.91
Non-Cytoplasmic	732	758	0.84
Transmembrane Helix	759	779	0.93
Cytoplasmic	780	834	0.89
Transmembrane Helix	835	855	0.80
Non-Cytoplasmic	856	860	0.60
Transmembrane Helix	861	881	0.88
Cytoplasmic	882	938	0.91
Transmembrane Helix	939	959	0.87
Non-Cytoplasmic	960	975	0.76
Transmembrane Helix	976	996	0.90
Cytoplasmic	997	1281	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEGGRKGS AEKNFWKMGK KSKKNEKKEK KPTVSTFAMF RYSNWLDRLY MLVGTMAAII  60
   61 HGAALPLMML VFGNMTDSFA NAGISRNKTF PVIINESITN NTQHFINHLE EEMTTYAYYY 120
  121 SGIGAGVLVA AYIQVSFWCL AAGRQILKIR KQFFHAIMRQ EIGWFDVHDV GELNTRLTDD 180
  181 VSKINEGIGD KIGMFFQSIA TFFTGFIVGF TRGWKLTLVI LAISPVLGLS AAIWAKILSS 240
  241 FTDKELLAYA KAGAVAEEVL AAIRTVIAFG GQKKELERYN KNLEEAKRIG IKKAITANIS 300
  301 IGAAFLLIYA SYALAFWYGT SLVLSSEYSI GQVLTVFFSV LIGAFSIGQA SPSIEAFANA 360
  361 RGAAYEIFKI IDNKPSIDSY SKSGHKPDNI KGNLEFKNVH FSYPSRKEVK ILKGLNLKVQ 420
  421 SGQTVALVGN SGCGKSTTVQ LMQRLYDPTD GMVCIDGQDI RTINVRHLRE ITGVVSQEPV 480
  481 LFATTIAENI RYGRENVTMD EIEKAVKEAN AYDFIMKLPN KFDTLVGERG AQLSGGQKQR 540
  541 IAIARALVRN PKILLLDEAT SALDTESEAV VQVALDKARK GRTTIVIAHR LSTVRNADVI 600
  601 AGFDDGVIVE KGNHDELMKE KGIYFKLVTM QTRGNEIELE NATGESKSES DALEMSPKDS 660
  661 GSSLIKRRST RRSIHAPQGQ DRKLGTKEDL NENVPPVSFW RILKLNSTEW PYFVVGIFCA 720
  721 IINGGLQPAF SIIFSRIIGI FTRDEDPETK RQNSNMFSVL FLVLGIISFI TFFLQGFTFG 780
  781 KAGEILTKRL RYMVFRSMLR QDVSWFDDPK NTTGALTTRL ANDAAQVKGA IGSRLAVITQ 840
  841 NIANLGTGII ISLIYGWQLT LLLLAIVPII AIAGVVEMKM LSGQALKDKK ELEGAGKIAT 900
  901 EAIENFRTVV SLTREQKFEY MYAQSLQVPY RNSLRKAHIF GVSFSITQAM MYFSYAGCFR 960
  961 FGAYLVANEF MNFQDVLLVF SAIVFGAMAV GQVSSFAPDY AKAKVSAAHV IMIIEKSPLI1020
 1021 DSYSPHGLKP NTLEGNVTFN EVVFNYPTRP DIPVLQGLSL EVKKGQTLAL VGSSGCGKST1080
 1081 VVQLLERFYD PLAGSVLIDG KEIKHLNVQW LRAHLGIVSQ EPILFDCSIA ENIAYGDNSR1140
 1141 VVSHEEIVQA AKEANIHHFI ETLPEKYNTR VGDKGTQLSG GQKQRIAIAR ALVRQPHILL1200
 1201 LDEATSALDT ESEKVVQEAL DKAREGRTCI VIAHRLSTIQ NADLIVVFQN GKVKEHGTHQ1260
 1261 QLLAQKGIYF SMVSVQAGAK R