YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K22E_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCQISCKSR RGGGGGGGGG FRGFSSGSAV VSGGSRRSTS GFSCLSRHGG GRGGSGGGGF  60
   61 GSQSLVGLGG YKSISSSVAG YGGGFGGRSY GGFGGGSGFG GSGGFGGGSG FGGGRGFGGG 120
  121 SGFGGGSGFG GGSGFGGGSG FGGGGFGGGR FGGGPGGFGG PGGFPGGGIH EVSVNQSLLQ 180
  181 PLDVKVDPEI QNVKSQEREQ IKTLNNKFAS FIDTVRFLEQ QNQVLHTKWE LLQQLDVGTR 240
  241 TTNLDPVFQA YIGILKKQVD RLTAERNSQD SELNNMQDLV EDFKKKYEDE INKRTSAEND 300
  301 FVTIKKDVDS CYMDKTELQA KMEMLTQEVD FLRTLYDTEL SQLQQNVTDT NVILSMDNNR 360
  361 NLDLDSIIAE VQSQYEIIAH KSKAESEELY HSKANEELQV TAVKHGDSLK EIKMEISELN 420
  421 RTIQRLQGEI SHVKKQCKGV QDSIADAEQR GEHAIKDARG KLTDLEEALQ QGRENLARLL 480
  481 RDYQELMNVK LALDVEIATY RKLLEGEECR MSGDFSDNVS VSVTSSTISS SVASKAGFGS 540
  541 GGQSSGGRGS YGGRGGGSTY GSGGRSSGVR GSGSGSGGGG YSSGGGSRGG SGGGGYSTGG 600
  601 GSRGGSSSGG GGYSSGGGSR GDSSSGGGSR GGSGGGSRGG SGGGGYSSGG GSRGGSSSGG 660
  661 AVSGSERGGS GSGEGCGSGV TFSFR

Type	Start	End	Confidence
Cytoplasmic	1	89	0.52
Transmembrane Helix	90	111	0.79
Non-Cytoplasmic	112	121	0.58
Transmembrane Helix	122	144	0.82
Cytoplasmic	145	150	0.51
Transmembrane Helix	151	170	0.68
Non-Cytoplasmic	171	685	0.90