YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIRA6_PANTR
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.73
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPALTALLC LGLSLGPRTH VQAGPLPKPT LWAEPGSVIS WRSPVTIWCQ GSLEAQEYRL  60
   61 YKEGSREPRD TQNPMEPKNK ARFSIPSMTE HHAGRYRCYY RSPAGWSEPS DPLELVVTGF 120
  121 YSTPTLSALP SPVVASGGNV TLRCGSQKGY DHFVLMKEGE HQLPQTLDSQ HLHSGGFQAL 180
  181 FPVGPVTPSH RWTFTCYGSY RNTPQVWSHP SDPLEILPSG VSRKPSLLTL QGPVLAPGES 240
  241 LTLQCGSDVG YDRFTLYKEG ERDFLQLPGP QPQAGLSQAN FTLGPVSRSH GGQYRCYGAH 300
  301 NLSSEWSAPS DPLNILIAGQ FYDRVSLSLQ PDPTVASGEN VTLLCQSQGQ FDTFLLTKEG 360
  361 AAHPPLRLRS KYQSQKYQAE FPMNPVTSAH AGTYRCYGSY SSNPHLLSFP SDPLKLMVSG 420
  421 PSGGPSLPPT GPPSTPASHA KDYTVENLIR MGMAGLVLVV LGILLFEAQH SQRSPQDAAR 480
  481 R

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	447	0.99
Transmembrane Helix	448	468	0.66
Cytoplasmic	469	481	0.66