YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2120732, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	43	0.75
Non-Cytoplasmic	44	54	0.68
Transmembrane Helix	55	76	0.86
Cytoplasmic	77	93	0.95
Transmembrane Helix	94	116	0.94
Non-Cytoplasmic	117	123	0.83
Transmembrane Helix	124	143	0.93
Cytoplasmic	144	162	0.77
Transmembrane Helix	163	181	0.92
Non-Cytoplasmic	182	189	0.59
Transmembrane Helix	190	209	0.91
Cytoplasmic	210	223	0.85
Transmembrane Helix	224	242	0.63
Non-Cytoplasmic	243	263	0.61
Transmembrane Helix	264	284	0.64
Cytoplasmic	285	303	0.90
Transmembrane Helix	304	328	0.89
Non-Cytoplasmic	329	337	0.84
Transmembrane Helix	338	360	0.92
Cytoplasmic	361	368	0.92
Transmembrane Helix	369	387	0.93
Non-Cytoplasmic	388	394	0.64
Transmembrane Helix	395	414	0.93
Cytoplasmic	415	425	0.78
Transmembrane Helix	426	447	0.88
Non-Cytoplasmic	448	456	0.71
Transmembrane Helix	457	478	0.91
Cytoplasmic	479	498	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAETSTMTS PTPPPRSLGS RAAGAAVTMI GQSAKMIVQF GGIVLLARLL TPYDYGLMAM  60
   61 VTAIVGAAEI LRDFGLSAAA VQAKHVSREQ RDNLFWINSG IGLMLSVVVF ASAHWIADFY 120
  121 HEPALVTISQ ALAVTFLLNG MTTQYRAHLS RGLRFGQVAL SDVGSQVLGL GAAVAAALAG 180
  181 WGYWALIVQQ VVQAIVNLII AGACARWLPR GYARQAPMRD FMSFGWNLMA AQLLGYASRN 240
  241 VGQVIIGWRT GPDALGLYNR AFQLLMMPLN QINAPATSVA LPVLSQLQDE RERYSAFLLR 300
  301 GQTVMVHLIF ALFAFACALA MPLIVLVLGE QWREAVPLFQ VLTLGGIFQT ASYATYWVFL 360
  361 SKGLMREQLV YSLVGRILLI ACIFVGSRWG AMGVAIGYSF GLLLIWPLSL VWIGKITDAP 420
  421 VGALFVNAMR ALVAYGIAGG CAYYASVTVG GPLWQQLLVG AGAMALVCLL ALAWPGFRRD 480
  481 VVAIVNIRKL LTQAKARR