YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17945043
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.98
Transmembrane Helix	52	73	0.90
Non-Cytoplasmic	74	98	0.94
Transmembrane Helix	99	119	0.91
Cytoplasmic	120	126	0.94
Transmembrane Helix	127	145	0.94
Non-Cytoplasmic	146	152	0.71
Transmembrane Helix	153	174	0.92
Cytoplasmic	175	184	0.89
Transmembrane Helix	185	207	0.93
Non-Cytoplasmic	208	223	0.90
Transmembrane Helix	224	244	0.94
Cytoplasmic	245	337	0.98
Transmembrane Helix	338	359	0.90
Non-Cytoplasmic	360	422	0.95
Transmembrane Helix	423	443	0.91
Cytoplasmic	444	449	0.83
Transmembrane Helix	450	468	0.92
Non-Cytoplasmic	469	476	0.55
Transmembrane Helix	477	498	0.89
Cytoplasmic	499	504	0.77
Transmembrane Helix	505	526	0.86
Non-Cytoplasmic	527	533	0.66
Transmembrane Helix	534	554	0.90
Cytoplasmic	555	563	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKNIKTAI PEKSKGLEND KDADGNSDST AEAEATPTEE GSATFDKAIE GAGFGIFNLM  60
   61 LLIVSIPAQS AAIFESSSMS YILPIAECDL RLTLEDKGVL NAVAYAGMTI SAIAWGYLAD 120
  121 TKGRKKILYW GYLIDAVCVF GSALSQNFSM LVMFKFLGGL VVNGPAAVLF TYLTEMHGPK 180
  181 HRSSVLMIVG MVTSTATVSL PLLAWGIFPR DWDFEFWGLQ VHSWQIFLFV LGIPSLISGL 240
  241 IFCSMPESPR FLMAQGRNEE ALQAFKQIYH VNTRKPKDSY PIKALIQEVP NRKAAQNEVI 300
  301 YTIEEKSGEV PTKRQSRTLA ESLRAGLQQM KPLVRKPLLG LAICCYVMQF GIFLGMNTIR 360
  361 LWLPQLFASM AEYEALHAGD GLDVSMCTIL EFSVNQTAET ALNYADACSE PKVISMDMYL 420
  421 NNIIVSATGF VGHFFAGGIL RALGPKRMMT YGLFLSGTFG LMLYFSVSSL MTLIVSATFL 480
  481 TITGIAVSSL LGAVVALFPT QLRTVVVAIA MMCGRFGALS GNLLFPVFVQ TGCLPPFIMV 540
  541 SSVLILSGIL SISLPDPAKA TFS