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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11138669
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRARQCLL VCLLCLSLTN LSYGENKFRE RKATDDELGY PDIDEDALLN TQCPKKLELR  60
   61 WQTEVTSSVY ATPLIADINS DGKLDIVVPS FVHYLEVLEG ADGDKMPGWP AFHQSNVHSS 120
  121 PLLFDIDKDG VREIALATYN AEVLFFRVSG FLMSDKLEVP RRKVHKNWHV GLNPDPVDRS 180
  181 HPDVHDDVLE EEAMAMKSST TQTNATTTTP NVTVSMTKEV HGANSYVSTQ EDQKRPENNQ 240
  241 TEAIVKPTPE LHNSSMDAGA NNLAANATTA GSRENLNRNV TTNEVDQSKI SGDKNETVIK 300
  301 LNTSTGNSSE TLGTSGNSST AETVTKSGRR LLEEDGSKES VDSHSDSKDN SEGVRMATVE 360
  361 NDGGLERDAD SSFELLREND ELADEYSYDY DDYVDEKMWG DEEWVEGQHE NSEDYVNIDA 420
  421 HILCTPVIAD IDKDGVQEMI VAVSYFFDPE YYDNPEHLKE LGGIDIKNYI ASSIVVFNLD 480
  481 TKQVKWIKEL DLSTDKANFR AYIYSSPTVV DLDGDGYLDI LVGTSFGLFY AMDHRGNIRE 540
  541 KFPLEMAEIQ GAVVAADIND DGKIELVTTD SHGNIAAWTT QGVEIWEAHL KSLVPQGPSI 600
  601 GDVDGDGHTE VVVPTSSGNI YVLSGKDGSI VRPYPYRTHG RVMNQLLLVD LNKRGEKKKG 660
  661 LTIVTTSFDG YLYLIDGPTS CTDVVDIGET SYSMVLADNV DGGDDLDLIV STMNGNVFCF 720
  721 STPSPHHPLK AWRSSDQGRN NKANRYDREG VFVTHSTRGF RDEEGKNFWA EIEIVDKYRY 780
  781 PSGSQAPYNV TTTLLVPGNY QGERRITQSQ IYDRPGKYRI KLPTVGVRTT GTVMVEMADK 840
  841 NGLHFSDEFS LTFHMYYYKL LKWLLVLPML GMFGLLVILR PQEAVPLPSF SRNTDL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle