YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18446984
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIDRLRPLP VEKLLSFRRN PDLLQQHRQQ TDEMEAIPKF LPSRLLPDDE DAKVASRRMA  60
   61 DNDEDTLRLP PPRRSPVSMR NLQRELYSPI QCMNALKVMA VVLTICLVFT TIPLLRRQTM 120
  121 QENDNLRMIL LWNEPSSLVD APAHMECGCL VTTSRSHNDK AFDAVVISAD HPYSFEGLGG 180
  181 VKLHPDFYAV YAAKKPLSST QNPLTNFTLP PFNLTMTYRL DSQLIWTDYY FSRTNLARRL 240
  241 KWFRAPSKSF ADDMPTPTVL RLESEILKKS RLAVYLVYEV NEKTLPESLY MEELRKYADL 300
  301 DAHDNCLGTD DCSHYHFMLI FETSACPDYV PPQMSMAMDK LLVPVLIGGG NLTNLVPSHS 360
  361 YISSQDFATP QDLIIHLKDL ANNQLEYRRY FWWHSIYRLR KTSQPYCALC SLIQQSPGGH 420
  421 EVRQRSYSLG FINWWSKYQC PNRSTTFL

Type	Start	End	Confidence
Cytoplasmic	1	92	0.82
Transmembrane Helix	93	113	0.78
Non-Cytoplasmic	114	448	0.98