YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71834428, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWLDDFRLS ETQREDEEDL EGLMDWWNTV EQWEDMPKND NMTEKEEAKA FAVTADKVQK  60
   61 GIRVFNKLFS ERAEGLWQHV IDLHAIADGL DRFNKKTKIA QITGGSTSAV GGVATITGLI 120
  121 LAPFTMGTSL IVTAVGLGVA MAGGLTSASA GITSTVNNSL DRKKVERIVG DYQAKMGDLN 180
  181 KCMKFIKQGI TNLRKFNLNK MKKHAYNRDF PCFDNVYEDG AMAGKAILTN ANEIMRVMQI 240
  241 ANVAGTTAAR AVQIASISTG VLTGLFVGMD IYFVAKDSHE LKNGAKSEFA AKIREVAEQL 300
  301 HEGLMELNVI RDELRMTTTV KEDQTS

Type	Start	End	Confidence
Cytoplasmic	1	101	0.98
Transmembrane Helix	102	122	0.93
Non-Cytoplasmic	123	129	0.70
Transmembrane Helix	130	154	0.85
Cytoplasmic	155	326	0.78