YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18652312
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METMQTIDFS FQVRKCQPEL IAPANPTPYE FKQLSDVDDQ QSLRFQLPLV NIYHHNPSLE  60
   61 GRDPVKVIKE AIAKALVFYY PLAGRLREGP GRKLFVECTG EGILFIEADA DVSLEQFRDT 120
  121 LPYSLSSMEN NIIHNSLNSD GVLNSPLLLI QVTRLKCGGF IFGIHFDHTM ADGFGIAQFM 180
  181 KAIAEIARGA FAPSILPVWQ RALLTARDPP RITVRHYEYD QVVDTKSTLI PANNMIDRLF 240
  241 FFTQRQISTL RQTLPAHLHD CSSFEVLAAY VWRLRTIAFQ LKPEEEVRFL CVVNLRSKID 300
  301 IPLGFYGNAI VFPAVITTVA KLCGNPLGYA VDLIRKAKAK ATKEYIKSMV DFMVIKGRPR 360
  361 FTEIGPFMMS DITRIGFENV DFGWGKAIFG GPIIGGCGII RGMISYSIAF MNRNGEKGIV 420
  421 VPLCLPPPAM ERFRANVHAS LQVIQVLDKV DRDMQTILSA L

Type	Start	End	Confidence
Non-Cytoplasmic	1	386	0.72
Transmembrane Helix	387	404	0.66
Cytoplasmic	405	461	0.61