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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18376153
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPMSGRGTP GPTQRAPGSF SPLPASTNST VNALAGADMG LVRPHRPSPG PVRIISASTS  60
   61 TSDDLTPLTI PRPSDQPTAP SPQPGGRPDA SGFGGRAGAS PERRGGGGTT PTPGRESATP 120
  121 IYSSFTSPSN SASAPSLQTN FSRPTVSTTA ALSTARSVAG TLSPIDTAPR NGPSPLTLPP 180
  181 TSATSTTSTS FSGRVGVHSR KHSANAGLFE PTLPSTSTSN LDQIQAESPK LSPTPSQAQR 240
  241 DMSASHIAAQ AAVSKSQLTQ QQQQQQPQQQ QQQQQQQQAP PFAHQHLVHL QHRQRSQTIP 300
  301 PSGEHHEQTS VANKRKSGGP MSPPILSLTE ASAPRDNVFG SQGNHNGLAG NHTLAATAAA 360
  361 NVVFPRSAQS SPKLPAQPTN PLTPTPPPVA AEKPAVKSEK SKVKLFSRPG KSSSKAESSK 420
  421 EKPLPSPGKL GHAFSNLQRA NYSTTSLESN MQQPFYAHGN SSTATIRPAE ATEKEVKEKE 480
  481 KKHGHFLKRQ KEKLIEAYHL PLSSASSNSR PTDPTAPSSL YNFNLPTSPG PSSNAFKSGL 540
  541 DLRHGGRALR EKKNKEDKSL DDAASSYNPG GDWPGPSSVS SATGNLASAL FHNEPFDSQK 600
  601 FGLNNMTLDD AWPFLRAKLL VIFEAEDLRL PVEDLNRIVT MHIQYCISRR SPNIIIEDIR 660
  661 DFLTTGFSSL DQSLKKTPED RLIPALVELW IFTFTSILPY LQAVFLPLDM EFAGNGPLMT 720
  721 PDQARDFWGG VPASYGLSIS ASSVLDIRRL VLLAFRDIVI LPRYDTLKIM FSRLSLEFLP 780
  781 QSLASMALSS PVPVPTSGFQ NTAHNQGGAY QPALSTSPSQ ESQLSLSFAG SLPATMTLGM 840
  841 GAGFGTAPPR PNTSMSNPVP SVDPSYASYN SNGMGTAGGG GDTPPGSGNR SRTISNVSFG 900
  901 SDHGNANRPF TPSSIQALGA ASAQAAMSTP SGVGIANLNL NMSTPVQQFP LHVAPSIASI 960
  961 GSNSIHGSLR DPTGGGGGGR TADQNVEDSK QVTEMVGRML QCMSVLASVS APTTPSFTSS1020
 1021 IPNQNPHSST GNLTSYNTYS SSQDSVATTT MTNATVPASP SGSSVAGGLP PLVQTMSSPS1080
 1081 QFSSPSSPAT PTANSPGPLP PRPSISSLSA SLATSGISGA GNNSLPNTPT AANATTPTTP1140
 1141 TAPANAAAGG GGGGGGGGGA GGPGGGTGGY GNVPPDESSR MIEELNKLLK LNWLGRGRTG1200
 1201 RNRRGIVGGR VKRAGAGSGS GSALAFSMGA GSAGMGYASS SSYGGYAGQG GGGGGGGGGG1260
 1261 GGGGGGGYAG SLGTGPAGVS MNSLGTTGTM GSMMSIGTVG SGFGGGLLQG QQAERDRGGG1320
 1321 GWTGTGTGSG LGTSASIIAG TTGTGGMMMS SLPIGASVSA TTAGTVGAGA ALAGAAGVSM1380
 1381 PAAAAGSLSN EIVVDN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle