YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18376398
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVAMSPNG MSSARTAGRK KRDGTCVLCD DRVPLSCPAC PEGTACTTIL ASCKECAHMI  60
   61 CAPIEENTDS NSYQPSDGDS SGSSTNVGAI AGGVVGGVAV IAILTYLVWR YCIKSRRQVV 120
  121 APERWDGVQA QDDGLEKSFA QARDNRASTH TVGSVADTVF TRASNIIQIA YIPGVTNRTP 180
  181 TSPAVLVPPV PPIPLGHGGS PSATGDQHFF VPGDLRDSTY SGISSFTDRT SYARTSYAPR 240
  241 SSVASTIYGK SVVITPAQTG MRAKPAMVSV KSAHSNLSGG TATPPVPSVN YEKYTGFRPP 300
  301 SPTNSRNSTF SVGSTFLNTA TPARAMVVRV GSVKKVNTTK PKTSDSSATS PTSARDSNVG 360
  361 TIIIDSPAVD QGPFSDPPSP PADRSATHGA ATLSAVLQQS TRRASSRTND SPGSRERERS 420
  421 PFGDEHATQD

Type	Start	End	Confidence
Non-Cytoplasmic	1	86	0.65
Transmembrane Helix	87	109	0.87
Cytoplasmic	110	430	0.57