YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCF1_PODAN
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGPLSNRP LPSSFDSNDD FYNENGFQKV LRRLKEEPLV PIGCLLTVAA FTNAYRAMRR  60
   61 GDHAKVQKMF RARVAAQAFT VVAMVAGGMY YQADRHKQKE LWKLRQQKDA EEKHQKWIRE 120
  121 LEARDAEEKA LQERLDKRRK RAAERAGGTG TESVAAQARA ALRESKAGKT ETGEATSTEA 180
  181 NQADGGVLGS LGGWFGGSKK APEDTTPALE SKPEDPKN

Type	Start	End	Confidence
Cytoplasmic	1	68	0.52
Transmembrane Helix	69	91	0.70
Non-Cytoplasmic	92	218	0.60