YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22095166
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	32	0.94
Cytoplasmic	33	36	0.79
Transmembrane Helix	37	56	0.80
Non-Cytoplasmic	57	68	0.76
Transmembrane Helix	69	88	0.88
Cytoplasmic	89	101	0.77
Transmembrane Helix	102	124	0.94
Non-Cytoplasmic	125	131	0.81
Transmembrane Helix	132	153	0.91
Cytoplasmic	154	173	0.83
Transmembrane Helix	174	193	0.87
Non-Cytoplasmic	194	204	0.81
Transmembrane Helix	205	227	0.91
Cytoplasmic	228	243	0.81
Transmembrane Helix	244	263	0.90
Non-Cytoplasmic	264	267	0.77
Transmembrane Helix	268	285	0.91
Cytoplasmic	286	294	0.82
Transmembrane Helix	295	315	0.89
Non-Cytoplasmic	316	324	0.77
Transmembrane Helix	325	343	0.92
Cytoplasmic	344	362	0.86
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	413	0.92
Transmembrane Helix	414	438	0.86
Cytoplasmic	439	927	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWSQLELEK PHIAYACVGV FCIIFSLVSL FVKERLYIGE ASVATIAGLI LGPHCLNWFD  60
   61 PDSWGNSDFI TLEICRIVLC IQIVAVAVEL PRKYMKKHWV SVAIFLLPVM TCGWLVVGLF 120
  121 IWALIPHFSF NYALLVSACV TATDPVLASA VVGKGKFAER VPGHLRNLLT AESGCNDGMA 180
  181 FPFIYLSINL IIHSGHGGEI VKDWILITIL YECVFGCLLG VFLGLLLKYA VAFAEKKNLI 240
  241 DRESFLALFV FLAFISAGIG SMLGVDDLLV SFAAGTAFGW NGYFARKTEE SHVSTVIDLL 300
  301 LNLSFFVYFG AIVPWPQFNN ADIGLNCWRL IVLALVIIFL RRLPAVVMLK PVTPDVKTWR 360
  361 EAFFCGHFGP IGVGAIFAAI LARKSLEAPY TTEETPLARI PDTEYPHYQV LATIWPIVCF 420
  421 VVITSIIVHG SSVAVLTLGK RLNRMAITMS FTTTNTQDQA SSWMSRLQKL DKASTSFSLH 480
  481 RVDTQVNKDQ DNEKLAQYNS IETSGVKVRP AGGAKRRKHK KKKHDSSYRL RHTLSKSRDQ 540
  541 EESPVSHRQR PQTEILQLGK VPSAETSQQV EESPTTAVSG ISQESSNEKA SDYSEARSEK 600
  601 NSNDIKEDES NVIHDNIEDN KSEYDNPVPT TAYQEGEQII VEDQNGEIYE TLPLKGAKKE 660
  661 KPKESANPDT MSIHSMNSLR RKLSQYSKVS EPFSDTEDKA KANVPKKKEK QKANSKTAYH 720
  721 KKDDPNSRLV YAHRVDNFIF IENADGEIIR RYRVNPHTKA KEDKSNQGIN SVFNKAISLV 780
  781 GIKNKPKADE NKNNTQQDLE KNNQNVLVPE HDEEDNNNHP LKDPKIESKI ENKLTNLILN 840
  841 SSNREKIVKQ MEDPKRHVEP HFLVVNPASE HTVSEPEDSD DDNEADTGAA SMDSEDEDLH 900
  901 ETEVERKRRL AALGHMPTKR DVNDEEE