YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|600018
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.93
Transmembrane Helix	90	111	0.89
Non-Cytoplasmic	112	118	0.59
Transmembrane Helix	119	140	0.55
Cytoplasmic	141	234	0.49
Transmembrane Helix	235	268	0.68
Non-Cytoplasmic	269	283	0.50
Transmembrane Helix	284	307	0.83
Cytoplasmic	308	352	0.56
Transmembrane Helix	353	375	0.87
Non-Cytoplasmic	376	395	0.51
Transmembrane Helix	396	410	0.51
Cytoplasmic	411	582	0.92
Transmembrane Helix	583	603	0.84
Non-Cytoplasmic	604	606	0.50
Transmembrane Helix	607	626	0.68
Cytoplasmic	627	726	0.77
Transmembrane Helix	727	752	0.76
Non-Cytoplasmic	753	787	0.79
Transmembrane Helix	788	807	0.90
Cytoplasmic	808	831	0.82
Transmembrane Helix	832	852	0.90
Non-Cytoplasmic	853	886	0.87
Transmembrane Helix	887	909	0.89
Cytoplasmic	910	937	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHIEPNPIDM WANRRAQNEF DDLIAAQQNA INRPNAPVFI PPPAQNRAGN VDQDEQDFGA  60
   61 AVGVPPAQAN PDDQGQGPLV INLKLKLLNV IAYFIIAVVF TAIYLAISYL FPTFIGFGLL 120
  121 KIYFGIFKVI LRGLCHLYYL SGAHIAYNGL TKLVPKVDVA MSWISDHLIH DIIYLYNGYT 180
  181 ENTMKHSIFI RALPALTTYL TSVSIVCASS NLVSRGYGRE NGMSNPTRRL IFQILFALKC 240
  241 TFKVFTLFFI ELAGFPILAG VMLDFSLFCP ILASNSRMLW VPSICAIWPP FSLFVYWTIG 300
  301 TLYMYWFAKY IGMIRKNIIR PGVLFFIRSP EDPNIKILHD SLIHPMSIQL SRLCLSMFIY 360
  361 AIFIVLGFGF HTRIFFPFML KSNLLSVPEA YKPTSIISWK FNTILLTLYF TKRILESSSY 420
  421 VKPLLERYWK TIFKLCSRKL RLSSFILGKD TPTERGHIVY RNLFYKYIAA KNAEWSNQEL 480
  481 FTKPKTLEQA EELFGQVRDV HAYFVPDGVL MRVPSSDIVS RNYVQTMFVP VTKDDKLLKP 540
  541 LDLERIKERN KRAAGEFGYL DEQNTEYDQY YIVYVPPDFR LRYMTLLGLV WLFASILMLG 600
  601 VTFISQALIN FVCSFGFLPV VKLLLGERNK VYVAWKELSD ISYSYLNIYY VCVGSVCLSK 660
  661 IAKDILHFTE GQNTLDEHAV DENEVEEVEH DIPERDINNA PVNNINNVEE GQGIFMAIFN 720
  721 SIFDSMLVKY NLMVFIAIMI AVIRTMVSWV VLTDGILACY NYLTIRVFGN SSYTIGNSKW 780
  781 FKYDESLLFV VWIISSMVNF GTGYKSLKLF FRNRNTSKLN FLKTMALELF KQGFLHMVIY 840
  841 VLPIIILSLV FLRDVSTKQI IDISHGSRSF TLSLNESFPT WTRMQDIYFG LLIALESFTF 900
  901 FFQATVLFIQ WFKSTVQNVK DEVYTKGRAL ENLPDES