YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19309405, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILSKEEED AHYREVLKGG TVGGIVGLIG GFAGVVAASK RYATIRNLTL PMKSFLVTSS  60
   61 GTFFGIIAAD HASRSFEASR NAERQWYESR EERLRQEELA GMSFIDRTMA FARREKYKIV 120
  121 GATWVASMIG SFAMVSRNPY LTGSQKIVQA RVYAQGLTLA VLVASAAFEI SDQRKGKGGD 180
  181 LWKDMVAAEE ERLKQKHQPL QSHLFQSFLF HFPSMFRLRM MSKSR

Type	Start	End	Confidence
Cytoplasmic	1	18	0.83
Transmembrane Helix	19	38	0.93
Non-Cytoplasmic	39	49	0.73
Transmembrane Helix	50	72	0.79
Cytoplasmic	73	116	0.92
Transmembrane Helix	117	136	0.86
Non-Cytoplasmic	137	151	0.77
Transmembrane Helix	152	168	0.62
Cytoplasmic	169	225	0.60