YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636157, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLYFFREP ETLYDCASFI CGLQFVMCCN GFSGRGTGFA ITRWKRIYSL GMAGLAVLVL  60
   61 FVSLSGLLGS EEIRSRMAAV DKMVLSIAAL EVVMSTLVFV VTVVSLQAAA RRHINIYVRL 120
  121 SAMDTLLMRD FGASLNYRKL LRKNIVVLLT VTVLYLGAIT SAVIQMASGH RTLFLLSAYC 180
  181 YVIVTAGPHF TGYVHMSLVE LLSIRFRLLQ KILSPKFLEW RFPQRQLREQ RVRQAVAMVQ 240
  241 ELHQLITEIN RVYAFSLWMS MAHDLAITTS ELYIIFGMGV ASMEEREDEE MQLNLKREQH 300
  301 KGSRVLLGYV ALCMAAPLYK LLIGPFYCER TVLEARRCLR LIEQLDNWYP TSPATKQLVN 360
  361 SLMCWRLQSR PQFTIGFDIL LNRTVLTLFV SILVNYLLIL IQFAMTQKMG EHIEQQKVAL 420
  421 QNWIGI

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.59
Transmembrane Helix	16	34	0.71
Cytoplasmic	35	46	0.75
Transmembrane Helix	47	68	0.93
Non-Cytoplasmic	69	84	0.81
Transmembrane Helix	85	106	0.90
Cytoplasmic	107	144	0.84
Transmembrane Helix	145	167	0.90
Non-Cytoplasmic	168	174	0.76
Transmembrane Helix	175	197	0.77
Cytoplasmic	198	304	0.80
Transmembrane Helix	305	323	0.83
Non-Cytoplasmic	324	378	0.82
Transmembrane Helix	379	403	0.81
Cytoplasmic	404	426	0.79