YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54636320, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASRSVITF GCLLALGHIL APTEANVHPV LTHKNASSLL GQLVTSSTLV WESYDPKDAT  60
   61 QLSFAVEGGK YITEDEHYPI YVCRVTIDGV HTSGHTEKIL QRHRCVAAHY KHGKYDNFDV 120
  121 LMNKGHLGKV GWKHWRKFDA GVPVGAIRIG DDSFIGRHRA THQPNSEGIA THWGADFNLG 180
  181 RLDPLGLGKI MVIENDREKY YDDGEVLIET EPFRYELRDI KLDRIRTDLR QNLTELATGK 240
  241 LENLGDKYST VETVMTYSFD YIQYWGSHDG VARGLPTKIF EKDIIIPAEI NWALKTSEKR 300
  301 FENKAVQTKL WPGTAINVTL RGTYVTLEAP YTAKLFAFYY GSDESVSRKI SADASHQVRK 360
  361 SYLKEVKLEF SPVYWIENGT LPTPINEPPL VHVKHMGEKH SGPDSLEKTL HDSPGSNEVN 420
  421 SHEAPENMSS NPGKDVALAG FGVNAAGSIA TAGSACMTLL LTLFLSL

Type	Start	End	Confidence
Signal Peptide	1	25	0.97
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	438	0.99
Transmembrane Helix	439	464	0.63
Cytoplasmic	465	467	0.61