YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125811434, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.96
Transmembrane Helix	54	74	0.92
Non-Cytoplasmic	75	91	0.77
Transmembrane Helix	92	112	0.91
Cytoplasmic	113	120	0.73
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	148	0.81
Transmembrane Helix	149	173	0.90
Cytoplasmic	174	179	0.83
Transmembrane Helix	180	201	0.91
Non-Cytoplasmic	202	211	0.76
Transmembrane Helix	212	230	0.96
Cytoplasmic	231	485	0.99
Transmembrane Helix	486	508	0.87
Non-Cytoplasmic	509	526	0.84
Transmembrane Helix	527	546	0.93
Cytoplasmic	547	556	0.83
Transmembrane Helix	557	578	0.93
Non-Cytoplasmic	579	583	0.87
Transmembrane Helix	584	605	0.93
Cytoplasmic	606	616	0.86
Transmembrane Helix	617	640	0.88
Non-Cytoplasmic	641	648	0.88
Transmembrane Helix	649	670	0.94
Cytoplasmic	671	687	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQQTKSQD ELTSARSLVP KQPDIAIKKA ENEEQDDEEQ IEEAAVVVPP DSGWAWVVMV  60
   61 ASFLCCTVID GIVFCSPLIQ QQLMAEFHVS KAYVSFVSSL LSGCYLMAGP FVSALANRFG 120
  121 FRAVTITGAI FAGICFGLSY FATSVEFLFI IYGVLGGIGF CMVYIPAVVI IGFYFEKWRA 180
  181 LATGVAMCGS GVGTFVFAPL TKTMLETGWR HTLAIQGIIV MSCALFGLAF RPIQPITLSA 240
  241 TNEEAGDEQE KSKLNGHGNT VAPTPQLHQA AFTKPLPEGR FAYSMPNSAH NTYMGASQRN 300
  301 HYPTAQEIFK GMNLERRPSG TAAGSKGTEL KALRKSQPTT PNGDPQQLTF NLHKELTTVG 360
  361 ENEEEAENDN LLETDAKSVT IQARRHTVSG RRPQDLAKRA AAAAAGNDGH HGQATSSSRP 420
  421 MYRDDIFFSG SLTRIPQYQS QTSLAYHMSV TRLPTKQDML QDRQKGCRIC PEAVRRTLAT 480
  481 MLDTSLLKSA SFMCLAVSGF LTMMGFFVPF SFVQDRAVHA GMTQDQGTAI LSAIGLVNTF 540
  541 ARIVCGSISS FPAVKPLWLN NFALTAGGLA TIFSGVVINT TSQWIFALFF GVCIACFSAL 600
  601 RSLIAVELIG LEKLTNAYGF LMLFQGLAAT FGTPIAGALY EATQSYDMAF YFAGGLILLS 660
  661 AFLCYPLTYV ARWEQGRNEK ITPLPAA