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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125773747, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRWKPAANS DNSPLDLLYE SKHLGIRRRA SVHLSEECNA APAADWRQVV GVRGGDVSIP  60
   61 RASDDSTLRR NYLKFPSRAQ GILEGGVRRV ERGTEERSGE GSGERRVEMR SLNKSVGLQG 120
  121 GEDELGNATD SIYTIKSKWI TDWSLNKERD KLCSILFKRV LDHAECKRLL EATKIYGEST 180
  181 DFSSWSANEQ LQWYRNFDVN DTSTLGLKNH SAGSGTATDT DTDTDLSSDN VLVPVLPPFA 240
  241 LWQTIFIAIC LAICIILTVG GNILVLLAFI VDRNIRQPSN YFIASLAATD MLIGTVSMPF 300
  301 YTIYVLKGYW DLGPVLCDLW LSVDYTVCLV SQYTVLLITI DRYCSVKIAA KYRSWRTRTR 360
  361 VIYMVTITWI IPALLFFISI FGWEHFTGKR DLLPGQCAVQ FLKDPIFNTA LIIGYYWTTL 420
  421 IVLFVLYAGI YKTAYDMQKR SEAKQRKMQS MVALSAGAMS GMAGHAAGIG VIEEKILKTK 480
  481 VELAGGQTDL DSASAACTTV IKRLSGSGQS NPLAQAAEEV ENMTPEQRRA SAAKIEEARK 540
  541 RDAVEAEKSE RSSSPAFDSD EESSVNQAQQ LITQQKLSNM RKRSSIGLVF GAQAALLATR 600
  601 GKGNLQKSTT NSKSIEAMHS MGGGRSPSHH HPHHHHPTHQ TSLQRAQSKE EVGIARLHHQ 660
  661 HQQHHSHSQN PNQNQNQHHQ LDRPPKRTSC STLSQIAEHD RLIDFQAQAQ APAQFTNDPL 720
  721 SPVDLAPIEV PSEEVHQGLV QAILPPPDAF QCPTPLSDDY SDRPFGNSSG NSELAMTYDL 780
  781 MTNNSELRYM DESSAMLATI TTTNNTSPND TISCSVRPTN PALPPPPPAR KHPPKADNST 840
  841 SQNHNQNQNQ NQNQNKNQSP SQSQSLNLSL SLNHSQNQSQ SQEAVAIEKR LLVSYTGIED 900
  901 FAKVRRESCI EAICLLDVPS GKLLADCPHR RASSPMETSS KDAILYSPMP PVSPKVKTQQ 960
  961 ATATATGTPT QTAAPPPALE RIEERETSDS NTNKMPSTSG TTSSSGGGGL AGGSRRDREE1020
 1021 ESQQKTDGIS NRGSSKRAFI HSIGKHFKSK KALPLALGGG GRQKSKSENR ARKAFRTISF1080
 1081 ILGCFVACWT PYHVLALVEG FCRNPPCTNE HLYMFSYFLC YANSPMNPFC YALANQQFKK1140
 1141 TFTRILKGDL HMT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle