YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125773781, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEAWSRGLLL TLYRAARVLG LISFRLDREE LQLKLPKSGS RNRILETVWR CLVVLTYAGV  60
   61 WPQLSAHLIT DRPESYADMF ALMQSFSVSI LALVSFIIQA KGEDKFRTVL NRYLTLYRRI 120
  121 CAVTRVDQLF PMKFIVYFLL KLLLTIGGCV HEFPPLLKNE HFKDARNMVA VIVGIYMWLG 180
  181 TLFVLDACFM GFLVSGILYE HMAFNILLML QRMQPIECEE KAVRMSKYQR MRLLCDYADE 240
  241 LDECASIYSE LYGVTIAFRR MLQWQILFYV YYNFISICLI LYLCILHYLN ANEIALVSLA 300
  301 MATIKLFNLI LLIMCADYAV RESQKPNRLP LDIVCTDMDQ RWDKSVETFL SQQQTQRLEI 360
  361 KVLGFFQLNN EFILLILSAI ISYLFILIQF GITGGFEASE EVRKQFN

Type	Start	End	Confidence
Cytoplasmic	1	46	0.91
Transmembrane Helix	47	69	0.85
Non-Cytoplasmic	70	79	0.82
Transmembrane Helix	80	98	0.96
Cytoplasmic	99	133	0.90
Transmembrane Helix	134	154	0.80
Non-Cytoplasmic	155	174	0.83
Transmembrane Helix	175	199	0.85
Cytoplasmic	200	267	0.92
Transmembrane Helix	268	289	0.94
Non-Cytoplasmic	290	295	0.79
Transmembrane Helix	296	320	0.81
Cytoplasmic	321	371	0.88
Transmembrane Helix	372	392	0.89
Non-Cytoplasmic	393	407	0.85