YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54638004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYLKGQTTR WILPDFLKRL LPRRFNRWKF QSKIVLPCLT ITIFLNTLYG IYWGRFSVKR  60
   61 QKFIFSKPVA VYSVLVGLTF AVYYVWQVYE EFTSGRISSR DTIKIYCYMN VCICLLNYVT 120
  121 QWGITGSIIR FQNSVPLFRV SNALDMSMMI VWRAVLDAVL KMILCPLIVY VTLILYQNRA 180
  181 HPEMEWTSKT SVKTMLPLII SNQVNNCFFG GLVISNLMIA AINKRIRSIV REVNMMQTPL 240
  241 QMELQKPYYR MRRCCELADS LDKLVIKYVL TVSRSRGYLR FTDWSMVMSM IMNLIGITLG 300
  301 FYNEYLAIAD YYINEEPFDL HQAIVQLVFL AVPFMELILV SRISSQMLQE NKKTGDLLQR 360
  361 IDLQYADVRF RQVVNSFWLQ VSTIEYKLMP LGLLELNSSL VNTIFAAVTG FLLILIQSDL 420
  421 TLRFSLK

Type	Start	End	Confidence
Cytoplasmic	1	32	0.83
Transmembrane Helix	33	53	0.91
Non-Cytoplasmic	54	67	0.70
Transmembrane Helix	68	86	0.95
Cytoplasmic	87	105	0.75
Transmembrane Helix	106	125	0.69
Non-Cytoplasmic	126	153	0.43
Transmembrane Helix	154	176	0.82
Cytoplasmic	177	280	0.71
Transmembrane Helix	281	302	0.89
Non-Cytoplasmic	303	322	0.85
Transmembrane Helix	323	343	0.88
Cytoplasmic	344	395	0.91
Transmembrane Helix	396	416	0.86
Non-Cytoplasmic	417	427	0.75