YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125775211, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	32	0.92
Cytoplasmic	33	42	0.89
Transmembrane Helix	43	64	0.93
Non-Cytoplasmic	65	89	0.87
Transmembrane Helix	90	114	0.83
Cytoplasmic	115	129	0.84
Transmembrane Helix	130	151	0.78
Non-Cytoplasmic	152	158	0.67
Transmembrane Helix	159	181	0.88
Cytoplasmic	182	188	0.80
Transmembrane Helix	189	209	0.87
Non-Cytoplasmic	210	240	0.82
Transmembrane Helix	241	258	0.83
Cytoplasmic	259	277	0.86
Transmembrane Helix	278	301	0.85
Non-Cytoplasmic	302	331	0.92
Transmembrane Helix	332	353	0.85
Cytoplasmic	354	384	0.87
Transmembrane Helix	385	408	0.90
Non-Cytoplasmic	409	414	0.77
Transmembrane Helix	415	435	0.91
Cytoplasmic	436	443	0.71
Transmembrane Helix	444	464	0.90
Non-Cytoplasmic	465	534	0.94
Transmembrane Helix	535	556	0.81
Cytoplasmic	557	679	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDLSTLGW DYLMFVLFIA LTVLGPLWTR IFGKKKQRSK ADYVFATGGV SIVAVMISIA  60
   61 RGTLGVRSVL GYPSELFYRG SAMWEIIYGM MTAYPIVCFM FVPVYFNLGI TSVYQYIDLR 120
  121 FKSRTVRCLA SATYIVRQIC NLGITVYTPS VALSTVIGIP YWASIVGMSV ICIFFTIMGG 180
  181 LKAAINADVI QTLTILVVTL AVCIQGSIST GGPKKVYQLN RDNGRLSFWN FTGDMTVRVD 240
  241 TVSAWLGQLF MSLSQIGCQQ NFMQRYVSLK SLKQVRRVML SNVPLVFFFF ALSWVSGMVI 300
  301 YSTYINCDPY AEGYIKKPDE ILPFFVEDQL GFLPGFVGIF MATLFNGALC MMVSNLNSLA 360
  361 TVCWEDFVSQ LPRFKGLSDK QQLRILKLIT VICGLIIMCV AFGVGLLAGV IESSLLVFSA 420
  421 TSGPLLGCFL LAMMVPVANW KGTSAGMISA CAFVLWIIGG SMTIDKSNPM LPTSTEGCSN 480
  481 HSFSQSIAKP IEMEQLPWLL THTPIDGYNQ TTLLETPPSI APERTPLETF YSISFMYYSL 540
  541 IGTAMTVVIG TLISMLTQHP DDEYDGKLLH PIIFRCWERF SGPKPYYVKH EEESGLNGRN 600
  601 SSDSSATTTT CKEEKVNHAY ESSPDEAHIH NEKQKSNPIA VVFTSSSSGQ DVGHQSICDA 660
  661 SKVQLDTVPP GETGVYRQL