YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTRA2_DROPS
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRCINNLE IFLRRCTAPT LHRCCVASSR TAHTASSSKG SGGDNSKDKE NNGQNKSGYR  60
   61 SFGWRSAFQF CVPFSLGALV SAVLIERHRD ELTPTISARS LKGRRNEFNF IADVVAGCGD 120
  121 SVVYIEIKDT RHFDYFSGQP ITASNGSGFV IEQNGLILTN AHVVINKPHT MVQVRLSDGR 180
  181 TFPATIEDVD QTSDLATLRI QVSGLPVMKL GKSSTLRSGE WVVALGSPLA LSNTVTAGVI 240
  241 SATQRASQEL GLRNRDINYL QTDAAITFGN SGGPLVNLDG EAIGVNSMKV TAGISFAIPI 300
  301 DYVKVFLERA AERRKKGSAH KTGYPVKRYM GITMLTLTPD ILFELKSRSQ NMPNNLMHGV 360
  361 LVWKVIVGSP AHSGGLQPGD IVTHINKKEI KNSSDVYDAL AEGRKDLEIV ILRGVKQMHV 420
  421 KITPEDP

Type	Start	End	Confidence
Cytoplasmic	1	65	0.59
Transmembrane Helix	66	85	0.57
Non-Cytoplasmic	86	427	0.92