YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54639282\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAMVFRQG LHHRASTLEH VLGVGGSSFV NCLNRYAAAT GFIRISFLDI KQRRNWDVAR  60
   61 LRLYADSKKH SLHLRTLQGR DLLQGVIDKQ RAEFIERKNF LVDDIREARH KVQERVREKI 120
  121 VEIREERENI MTIPNMLTIS RAILSPYIGY VIVQGDFTFG MSLLAIAGVS DLLDGQIARR 180
  181 WPSQATKAGS FLDPMADKLL MGSLVISLCY TDLMPMWLAG IVVFRDVFLL AAGFVIRYIS 240
  241 LPPPKTFSRY FDATHVTAQL EPTLLSKINT GVQLATIGLS LGAPIWNYLD HPALHGLWYL 300
  301 TGLTTAATAL SYVMNRHNTF KIIQKKT

Type	Start	End	Confidence
Cytoplasmic	1	142	0.78
Transmembrane Helix	143	169	0.69
Non-Cytoplasmic	170	220	0.48
Transmembrane Helix	221	241	0.82
Cytoplasmic	242	267	0.80
Transmembrane Helix	268	286	0.80
Non-Cytoplasmic	287	294	0.75
Transmembrane Helix	295	315	0.92
Cytoplasmic	316	327	0.93