YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54642638\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKQTVSPK FGGTVKAKAK STTSDSPPPS PTDKSLIKSK PNRRMSTNRE SSTEANTLPA  60
   61 QKSVVVAYVL WLFGGIFGLH HLYLHRDRHA FIWACTLGGY MGIGWIGELF LIPEYVRDAN 120
  121 EDPRFVKAFV AKLQAFQRPP YSSKRFVGQV MIGHLFGQLF AMAIPQTVVA GFDLSFLHWA 180
  181 IPIFVSQGIW LVGNIGREQG VWWHCLLAAY LAYPARYFIY DETYSLLLTG LVSALTFDGI 240
  241 SKQWRRTPPR RGRPVERSLK LTGAILIYCT FWGSFVYFNG TIADEDGGEV PIHEALHNFL 300
  301 ASAWWTDLKQ ALHDTYIYAQ HHGWYETWKE VFESMDVDGE RNSYKVLGVS ATASQAEITA 360
  361 AYRRLSKEYH PDKVKDEALR NEAHQRFIEI QQAYNVLSKI KSNRRRKNKQ FQEDDAIVL

Type	Start	End	Confidence
Cytoplasmic	1	63	0.93
Transmembrane Helix	64	84	0.92
Non-Cytoplasmic	85	89	0.85
Transmembrane Helix	90	111	0.91
Cytoplasmic	112	145	0.91
Transmembrane Helix	146	168	0.83
Non-Cytoplasmic	169	174	0.73
Transmembrane Helix	175	193	0.90
Cytoplasmic	194	199	0.83
Transmembrane Helix	200	219	0.85
Non-Cytoplasmic	220	223	0.79
Transmembrane Helix	224	241	0.90
Cytoplasmic	242	260	0.85
Transmembrane Helix	261	281	0.79
Non-Cytoplasmic	282	419	0.81