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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125980742, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLHVLAAA LPLLLIAAVS AERSNNDLLS GYSTPMEGSM AHKFFALAAD QAILANATTN  60
   61 QVSRSQRVGD DDEDHPVYDD DLCDRDLIRI RDAIANTEEW ALEFPDTWGR LPMGLFWGHT 120
  121 ISMGQYEECV AATNTYGDEI RGQYCLATLN ITMFYKDVKK RGEEFQSSRI SYKQTDPEIF 180
  181 ELGICIPSTC RPKKTDALLK DVISHFYGDD VVSMDVDMVT QTRCKYDAPI TLRGIDIFAI 240
  241 IFFSTIVFFM IASSVYDYIQ TRKKAPKRPL LIAFSVLHNA PKIFTVKKVN NPNVIHCLNG 300
  301 LRCFSMMWVV FGHGYMTFYD LPHINRNKFY TWVETPYSML VQNGSLCVDT FFFMSGLLMC 360
  361 WGAFRELERT KGKLNIPMMY FHRYIRLTPV VAVVVLYIMS LYKYSGEGPM WFKLGTQDKR 420
  421 CEDSWWATLV YIQNYAYPYH ICVSQSWYLA VDTQLYFLSP LFLIPLWKWG KKALIPISIF 480
  481 GLICLAGTFI TFMLEDFTLF RVQDDHVDLR QKMTYYPTHT RIPTWLIGVI FGYFLFTRNR 540
  541 GRQIPLAKVW VVVGWTVAFG TMLADMWGPY WRILPGTPNS PLIEGALFEP LSRSSWALSI 600
  601 GWIVWACYNG HGGLINDFLS WSFFTGFSRL TYCMYVIHRI VQLVNAARLQ TDTHFSNYDA 660
  661 ILRWWHDFGI TLTASIFATL AFEAPILGIE KAIFGGSKAP PKKPSPGDLA KSAAPEVKEA 720
  721 APTASDPAPA AVSGSPATVE TEAEITPSPG STTEELSKLT RKAYKFKQHS NRTSKDSNDR 780
  781 IDPTVCPKTG KIKSSASASG TQPPLAFTAP PTEAATAGAI AGGGEGPVPV FRRHISHTTA 840
  841 VKFLYARKFD IPRAVSLYEQ HEQIRQKEYL YNIDPDVEPL RSELQTGKFT ILPARTSSGA 900
  901 AIALFTANRH SPLSVGHTTT LQGIVYQLDS ALQDTETQRA GLVFIYDMSG SKYSNFDYDL 960
  961 SQKILTLLKG GYPARLKKVL IVTAPLWFKA PFKILRLFVR EKLRERVFTV SVPQLGLHVP1020
 1021 RKALPLHLGG TLEIDHATWL LSCRQSMTNR EDELLANITV GTVTGVTGVA GVTGVSGAGA1080
 1081 GTVAGLAVRA TGGGPGAEAT NGGEFWSENP PSSASSGFSD DDSLAGQEGD PKPIEQIVQM1140
 1141 VMQRGRHGLV KEYTDIRNRT PDGTFLHARM RANLTKNRYT DVLCFDHSRV VLAQEDGVEE1200
 1201 LSDYINANFV DGYKQKNAYI STQGPLPKTS HDFWRMIWEQ HCLVIVMTTR VMERGRVKCG1260
 1261 QYWEPTEDSS LEYGDFHVRT ISVECNEDYT VASLELRNIK TDEIRNVSHW QFTSWPDYGV1320
 1321 PSSAMAVLNF LQKVRDKQAE LVEALGDTWA GHARGPPIVV HCSAGIGRTG TFITLDICIS1380
 1381 RLEDVGTADI RGTVEKIRSQ RAYSIQMPDQ YVFCHLALIE YAYSRGMLQT VDLAGFDERE1440
 1441 PDSE

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