YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643190, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYTLLLRIWM IQGLVLGITG HYYSPSRRRL VPSRVLHWYS WLMMLATLAL YWGYWLYAQD  60
   61 YFVQGTFRRH GFVQSLSYGT VVLQLIALVV QTVLRMFREQ EVCAVFNELM AMRSTVSRVH 120
  121 PQGQPSRFYY VVFFGRLFNY LQNLNFSLSI LLIVDMRSVS VWDYLSNFYF VYMSLVRDTL 180
  181 LMSYILLLLE LGEVLRVNGE HPRTSYAGLM RQLQRQERLL RLVRRVHRLY AWQVLATMFF 240
  241 QLYFNMATFY VGYSFLAASS APVSGFRVWN AKFLLTVLTF ITKLFDGLLL QIVGERLLAQ 300
  301 GNKPCAGPRV EDVTYMQAAQ RQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.76
Transmembrane Helix	6	24	0.79
Cytoplasmic	25	34	0.92
Transmembrane Helix	35	55	0.93
Non-Cytoplasmic	56	71	0.88
Transmembrane Helix	72	94	0.84
Cytoplasmic	95	136	0.90
Transmembrane Helix	137	154	0.57
Non-Cytoplasmic	155	167	0.50
Transmembrane Helix	168	188	0.56
Cytoplasmic	189	228	0.89
Transmembrane Helix	229	251	0.84
Non-Cytoplasmic	252	270	0.64
Transmembrane Helix	271	290	0.67
Cytoplasmic	291	322	0.85