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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|125982366, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDPGPLWA SSRSRCLMAA LLLLICGGQV AAQSNYVQHG DSGNYTTNGL PEEATLDGKV  60
   61 TKLDDISPLI FLNRTKAALN CAAGSMQVDL KFNDPFHGII QADYDRSSAC RVSGKGALSY 120
  121 RLELPLKGCG TIQNPTRVFT NNIIVRFHAN LEMDGDEIIT IVCRYPPPVP SLPPALPAPI 180
  181 LNPIATSSVL QPPLKSIQIL MIICAIMFLT LLLLGLAVSY YCLRSRPIPV VRRLPMSMGS 240
  241 GSEITKLSGS SLGNISVFEG VKIPRAHAAL QAVYSSSGSE GALIPSDYPS ESHSEIEEID 300
  301 TRSLPFSSAG SFENRAFVQE TSSIYSDHYA PAQEMPVANA VVTTAAITTR HALPLQEGSP 360
  361 KFDVQVRVKK SPPPIPSPVT SDTESVATLR PDRNNLSTIM EAYEDRESIM TMDSLPPQVE 420
  421 TMQSQFTYVP ELHPAPQVPP PLPEPKFSVY TRTHHEVVDG RPETWSDYTD GTRAPSEITD 480
  481 LSSEAPDRAV ETMHYYEDEY VPIEPQPHSM AVAVAAVPPK PLPLPHVTSH TVDDVYLRTV 540
  541 TEKKTIEDIE SHKRRVTEYK SKPKAPLPPV APPAPPVDPK FDVKVRNYPS EREQQLWENF 600
  601 SDISSASGLT LTPKMERSEL SLPPAEPPSQ IHDNKLKLTS PELVGNMKPI EVPPQDMDVP 660
  661 NWDVLIRILE EPEMSEISGG GDRDDTSSVH NNISYDDRAK WKEIITTQST LRSMLTEAVV 720
  721 REDFERIRQD TRYERMFEPQ TWDVIIRILA PPSDDDTDVE MRLPRRGGKK APPQPWDTRS 780
  781 RRSSLPTLYE YDSDGGSSVR TIRNDPGLPL HVGGGGGHPG QPVGLGPFNM QRSRRSSRTS 840
  841 YQTDHNDFRS MSEVTVDFGR PQADQLDNVS DASSYYRMQY YDDEDRRSFH RSLSHPSLAR 900
  901 SASEFTEHWT APDDLEIEIS SPEGTPHARR ARQPLAIAAG RTGEQRVLAQ TQSQSEYVET 960
  961 HRSVYHAEKE LPMPPRKW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle