YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125982875, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.69
Transmembrane Helix	5	25	0.92
Non-Cytoplasmic	26	143	0.71
Transmembrane Helix	144	165	0.87
Cytoplasmic	166	177	0.57
Transmembrane Helix	178	203	0.74
Non-Cytoplasmic	204	210	0.55
Transmembrane Helix	211	230	0.76
Cytoplasmic	231	237	0.68
Transmembrane Helix	238	261	0.82
Non-Cytoplasmic	262	274	0.79
Transmembrane Helix	275	295	0.93
Cytoplasmic	296	308	0.90
Transmembrane Helix	309	332	0.84
Non-Cytoplasmic	333	339	0.59
Transmembrane Helix	340	359	0.93
Cytoplasmic	360	368	0.84
Transmembrane Helix	369	390	0.85
Non-Cytoplasmic	391	399	0.77
Transmembrane Helix	400	421	0.81
Cytoplasmic	422	440	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLRWMWLML ALGLSPIAMA WMAHFRPSSL TLRMEKGDRV SLTLENVPPS TLQSPQRYVF  60
   61 RLESAANDLA SVPEENSTIA VDLLNPDTRD WTGDIQVNAH FLGETKITVR LFDNMSNSSQ 120
  121 LPTQGSNDST LDVKVQRPSR VVDHVFIGSI VLLMSLLYIN FGAALNLDVL RGLVTRPVGP 180
  181 CIGFVMQVVA MPLLSYALGV FIFPEAPAMQ LGLFFTGISP SGGASNTWSA VLGGNIHLSV 240
  241 LMTTVSNVAA FVTMPLWIFT LGQLIFERAG MQVPYGTIAT YCACLIIPLL MGLAVQKRSP 300
  301 RLTRVLVRLL KPISACLILF IVIFAIITNF YLFYLFSWQI AVAGMALPGL GYIFAWLAAK 360
  361 LLHQTAADAL TIAIETGIQN TGIAIFLLTT TLESPQSDLT TVVPVSVAVM TPLPLLGIYL 420
  421 YNRCCRPKPD EATAGESQRI