YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125983370, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.98
Transmembrane Helix	89	111	0.89
Non-Cytoplasmic	112	121	0.71
Transmembrane Helix	122	146	0.88
Cytoplasmic	147	164	0.86
Transmembrane Helix	165	190	0.78
Non-Cytoplasmic	191	206	0.90
Transmembrane Helix	207	228	0.92
Cytoplasmic	229	235	0.83
Transmembrane Helix	236	257	0.94
Non-Cytoplasmic	258	284	0.95
Transmembrane Helix	285	305	0.93
Cytoplasmic	306	319	0.83
Transmembrane Helix	320	341	0.88
Non-Cytoplasmic	342	358	0.82
Transmembrane Helix	359	382	0.88
Cytoplasmic	383	410	0.96
Transmembrane Helix	411	430	0.93
Non-Cytoplasmic	431	437	0.60
Transmembrane Helix	438	461	0.81
Cytoplasmic	462	611	0.95
Transmembrane Helix	612	638	0.78
Non-Cytoplasmic	639	646	0.53
Transmembrane Helix	647	663	0.45
Cytoplasmic	664	719	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTAESNGN RRTVDWQRFG LGGDDDGEVA VASFRQRTNN NTGGFVDLGN EYTYAAGGHH  60
   61 ASGANEIFAG EQGDKPWWRS NFFISQPVLF GTWDGVFTSC LINVFGVIVF LRSGWIVAQA 120
  121 GIINAVAIIV CTVLIALVSV LSAIGICERC RVESGGVYFL IAHTLGSRFG GALGLLYCFG 180
  181 QAVGCALNVM GFGESMAGLV GLEGNKWAIR GFATAAVLLL GCINVAGVKW VIKLQFILLM 240
  241 ILLISALDFM VGSFVGVDPE NGFDGWVSGN FAENLWPSYE DGYSWFRVFG VFFPTVTGVL 300
  301 SGINMSGDLR APSTDIPNGT LAAFGTSTFL YLVFVLFLGA TCQRAILYKD FMISVKVSAV 360
  361 HFLLLAGIYV SSMSSCLGAM YGTPRVLQSI AKESVIPGID VLGKGRGPNK VPLYAMAIVA 420
  421 LVTVTFIIVG DINFLAPIVT MPFLLTYACI NYAYFALAQT FDIQEQREER FRIQASSPSY 480
  481 ETRRYGSVSD GGNDLDLLFP DRVRHKNLQS PQNSPMHQAA PMEFDLEGPS TSSTAPAPSQ 540
  541 AEARASTTTI ATETGTEDAT ALSVEQTATQ GGSEDENEPI APIRPPIHSK TKNWYSGYCN 600
  601 RWFSLGGAFV KLLVMLLVNW YYALTCFLVV FVVWFYVGTA NPAVKPGLTA EFNFFAWLKS 660
  661 VIFRCFGKRI HEYEQIVVTP SCPGVDLSPT QLNEQNEDFR PRPNYHHSSV IEGRLIDDI