YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54643843\|gb\|E...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLRCQARI LFSTAASSGR LIRLNLLRNV ATGSGTGTGS GTGSGSGFRS RAKLMQKLRE  60
   61 WHARAFSNRF LLFTNVGISL TLSCLGDVME QHLEIYSGEI ERFDSLRTSH MATSGVTVGI 120
  121 ICHFWYKMLD KRMPGRSMRV VAKKIVLDQL ICSPVYISVF FVTLGLLEQK DKHEVWDEIK 180
  181 DKAWKLYAAE WTVWPAAQFI NFYWIPTHYR IFYDNIISLG YDVLTSKVKH TKSHIKKIP

Type	Start	End	Confidence
Cytoplasmic	1	65	0.71
Transmembrane Helix	66	89	0.83
Non-Cytoplasmic	90	107	0.92
Transmembrane Helix	108	126	0.95
Cytoplasmic	127	144	0.91
Transmembrane Helix	145	167	0.71
Non-Cytoplasmic	168	239	0.59