YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54644620, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.93
Transmembrane Helix	52	71	0.88
Non-Cytoplasmic	72	91	0.78
Transmembrane Helix	92	113	0.83
Cytoplasmic	114	120	0.79
Transmembrane Helix	121	140	0.95
Non-Cytoplasmic	141	146	0.78
Transmembrane Helix	147	169	0.91
Cytoplasmic	170	178	0.78
Transmembrane Helix	179	199	0.94
Non-Cytoplasmic	200	206	0.81
Transmembrane Helix	207	229	0.92
Cytoplasmic	230	451	0.98
Transmembrane Helix	452	473	0.80
Non-Cytoplasmic	474	485	0.73
Transmembrane Helix	486	505	0.86
Cytoplasmic	506	516	0.84
Transmembrane Helix	517	537	0.94
Non-Cytoplasmic	538	543	0.76
Transmembrane Helix	544	566	0.90
Cytoplasmic	567	573	0.85
Transmembrane Helix	574	596	0.82
Non-Cytoplasmic	597	608	0.82
Transmembrane Helix	609	630	0.91
Cytoplasmic	631	653	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKEKVISTQ KANSKDHKLN GAKNENSNKK VSLLNKKDDS EEYDLVPPDG GWGWLVLFGS  60
   61 CLTNILIPGT IKSFGVLFVE FVEEFNATPT KASWIPAICY FLYSSLGPVS SILSVKYSYR 120
  121 TVTLLGGASA SLGMILSFWA SSVEYLYISY GVLVGIGAGL SFPPTVYIVT SYFVKLRGLA 180
  181 NGLCISGSAL GSIILPPLLR WLLETYGYHG SCLIMGGITL NVFVAALFYE PVEQHMVRVP 240
  241 RARQALDDIP EEEDIGIVMK FENVDETATN HEQSDKQLLP YNSPPSPLYL PDDDKQQFVR 300
  301 SASEAVVQSY AKPGDEFQPR TRKISTPVRL PQRNQTFTPG QLNSQSSLYA VPEGRSSSKL 360
  361 TLRNLSRSRL SKRSPSTSSF LYISTPYHGS TLSFQPKEFS SHLSLRSVGS NGSAVDTTGQ 420
  421 DKAQATDDTQ GKTQSSQRSK FFDLSLLKDP MYLVILISNS TNAISYTNFI ILLPSFGADR 480
  481 GFNKSLAAYL LSVVSATDLI GRIGGSALSD MGLIPKTWYF VGGLSISGLS LTLLPFASSY 540
  541 STVCFWCALF GLASGIYVGI TAVIMADMLG TERLTSSYGI SLFINGILQL VGPPLCNYWY 600
  601 EAVDDYNPLF HALGLTLLAG ASLWSFMPWI ERRKAKAEEK LEAQIDEEAV DGY