YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125985927, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	182	0.63
Transmembrane Helix	183	203	0.89
Non-Cytoplasmic	204	222	0.51
Transmembrane Helix	223	238	0.38
Cytoplasmic	239	354	0.83
Transmembrane Helix	355	372	0.85
Non-Cytoplasmic	373	378	0.69
Transmembrane Helix	379	397	0.91
Cytoplasmic	398	411	0.68
Transmembrane Helix	412	432	0.84
Non-Cytoplasmic	433	446	0.82
Transmembrane Helix	447	468	0.88
Cytoplasmic	469	483	0.76
Transmembrane Helix	484	506	0.84
Non-Cytoplasmic	507	529	0.89
Transmembrane Helix	530	550	0.92
Cytoplasmic	551	643	0.99
Transmembrane Helix	644	664	0.92
Non-Cytoplasmic	665	669	0.89
Transmembrane Helix	670	689	0.91
Cytoplasmic	690	700	0.82
Transmembrane Helix	701	723	0.87
Non-Cytoplasmic	724	742	0.85
Transmembrane Helix	743	766	0.86
Cytoplasmic	767	789	0.71
Transmembrane Helix	790	811	0.82
Non-Cytoplasmic	812	833	0.67
Transmembrane Helix	834	857	0.85
Cytoplasmic	858	860	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPYGYSKP TFMITDHSRD PYHLHVEETA DEDECDADGD GEVDVERHSK LQEIINWLHL  60
   61 NAKHPRNCEV TEGALQVWRT LPERIRQDPS LASFRQEHER LHGDGDPLPP EEVGTGGVPG 120
  121 EQLENGPHEE TTLDTHAFTQ IGINVTNEAG QVRVIDGRDL ENNNEDQHDE VETHGKSTFV 180
  181 KYLIWFKIAV LLVVWCVFTA FLMSNNEHVD QLSLISVPRN GSPRVFPITT STLQRIGLGL 240
  241 RGPFRLQENE LTINESVPLP LLQVQVMRSY FDAEGMEVYI ENASQLWQLD VVYPDLIDAT 300
  301 VDTKKQRTFE LNPTDPLWLA QSNRTELSFE FVSSIEGELP LQLNVDESPI YKRDGVIYAA 360
  361 AVLCGLYIMI IWEIVNRTFA AIIASTLSVG ILAALNSRPS MATIMGWIDV ETLLLLFGMM 420
  421 ILVAILSETG VFDYLAVYAY KITNGHVWPL INCLCLFTAV LSSFLDNVTT VLLMTPVTIR 480
  481 LCEVMCLNPV PILMCMVIYS NIGGALTPVG DPPNVIIASN SYISKNGVNF AVFTLHMLPG 540
  541 VLLVMVQTYI QLRFKFRNIS DLQFKDSPEV EELRHEIHVW KRAAASLSAY SKDEELVRQT 600
  601 LMKKVNRLKR SLKKRMTAVI EPAPNYQQTL ANLQAKYPIR NKQLLVKCSL ALLFVISLFF 660
  661 LHSVPELQRL SLGWTALLGA IFLIILADIE DMEAILARVE WSTLLFFAAL FILMEALTEL 720
  721 GLIEWIGNMT EGIILGVGED RRLMVAILII LWVSAVASAF VDNIPLTTMM VKITISLAQN 780
  781 STLNLPLQPL VWALALGACL GGNGTLIGAS ANVVCAGVAE QHGYKFTFLQ FFKVGFPIMI 840
  841 GSIIVATGYL LVSHSLFAWH