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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54645443, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.26
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNAVLYKSSN NSATLSTLSL SPTTNPNPNS TPRAEPVPLL TPLQKMTNDL KQCNTNANHG  60
   61 SQNNLCNGVG VALAPKVMNN GSSSSNDQKK GTISLSHLPQ RPPVDIEFCD ISYSVAVGHR 120
  121 RGCKTILKSV SGKFRNGEIT AIMGPSGAGK STLMNILAGY KTAQLSGSVL INSKERNLRR 180
  181 FRKLSCYIMQ DDVLIANLTV GEAMMVAANL KLGKHMISYA KRVVVEEILE TIGLKESVHT 240
  241 LTCNLSGGQR KRLSIALELV NNPPVMFFDE PTSGLDSSTC FQLISLLRSL ARGGRTIVCT 300
  301 IHQPSARLFE KFDHLYLLAQ GQCVYEGRVR GLVPYLSSLG FECPSYHNPA DYVLEVASGE 360
  361 YGDAVPKLVQ AVKGGACKKY AHKDYCLTLL PTKAAESATL HLEDEKPPLL SGDSNPLDAE 420
  421 AEAEADADLK PPKLEAQQSQ NSDCSAVILM PQSNDDSCSF SSSKGGGAHN AVGGPPSGGV 480
  481 VGCMTSLLDS HESVVTLPNK TGFPTSGWTQ FWILLKRSFR TILRDRMLTH MRLFSHVIVG 540
  541 AIIGMIYYDV GNEASKIMSN AGCIFFVSLF TTFTAMMPTI LTFPTEMSVF VREHLNYWYS 600
  601 LKAFYFAKTI ADMPFQIVFS SVYVLVVYYL TSQPMEWNRV SMFVLIQVLN SLVAQSLGLL 660
  661 IGAGMNIETG VFLGPVTTIP TILFSGFFVN FDTIPGYLQW VTYVSYVRYG FEGAMVAIYG 720
  721 MDRAKLQCNQ MYCHYRVPKK FLEEMSMDNA HFWVDAVALT GIFFALRIIA YFVLRWKLHM 780
  781 IR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle