YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8099181
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.89
Transmembrane Helix	12	32	0.93
Cytoplasmic	33	37	0.79
Transmembrane Helix	38	58	0.84
Non-Cytoplasmic	59	68	0.81
Transmembrane Helix	69	90	0.85
Cytoplasmic	91	101	0.81
Transmembrane Helix	102	125	0.90
Non-Cytoplasmic	126	133	0.81
Transmembrane Helix	134	153	0.94
Cytoplasmic	154	173	0.85
Transmembrane Helix	174	197	0.83
Non-Cytoplasmic	198	204	0.89
Transmembrane Helix	205	227	0.92
Cytoplasmic	228	243	0.86
Transmembrane Helix	244	263	0.90
Non-Cytoplasmic	264	267	0.76
Transmembrane Helix	268	285	0.91
Cytoplasmic	286	294	0.83
Transmembrane Helix	295	315	0.90
Non-Cytoplasmic	316	324	0.82
Transmembrane Helix	325	343	0.93
Cytoplasmic	344	362	0.85
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	413	0.92
Transmembrane Helix	414	438	0.90
Cytoplasmic	439	796	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWSQLELEP PHIAYACVGI FSTLFSLVSL FVKERLYIGE ATVASIAGLI LGPHCLNWFD  60
   61 PVSWGNSDYI TLEICRIVLC IQIVAVAVEL PKKYMMKHWL SVTIFLLPVM TCGWLIVGLF 120
  121 IWCLIPHFTF NDGLLVSACV TATDPVLAAA VVGKGKFAER VPGHLRNLLS AESGCNDGMA 180
  181 FPFIFLSLNL IIHSGHAGEI VKDWFLLTIL WECIFGCLLG TVIGYVLRKL VAFAENQNLI 240
  241 DRESFLAIFV FIAFISAGIG SMLGVDDLLV SFAAGTAFGW NGAFAKKTEE SHVSTVIDLL 300
  301 LNLSFFVYFG AIIPWPQFNN ADLGLNVWRL VVLAFVIIFL RRIPAVVALK PITPDVKTWR 360
  361 EALFCGHFGP IGVGAIFASI LARKDLEAHY TTEETPLHHL PNEDFPHYQL LATIWPIVCF 420
  421 IVITSIIVHG SSVAVLTLGK RLNRMAITMS FTTDQEGNGS GGWMQRLQKL DRTTTSFSLH 480
  481 RVDTMAPTEK SQPETTGIKV RPAGGAKRKK NHKDDRTPPE AQILQLGGNK TPEPESASDT 540
  541 LAIPNKTSRV ICIWRETTLQ KPKRHQCQPV AYQDGDQVII EDQYGEVMEN LKLTTKPVRA 600
  601 PDIGSIHSME SLERHLTQYS TGSGEYTTDE DTHGLQEKLS RSLSRRSYYK KDDPNKRKVY 660
  661 AHRVDDLIVI ENEDGDIIRR YKVNKHAPAP RARSGSIMGM VKSMVGIKPP PEISVTDLEH 720
  721 GTQHKIILPE EENTPMSSKT EQKLEDTIAN ILQENHTQPI SEESADEEET EVEKKRRLQA 780
  781 LGYLPSSRRD REDEEE