YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149067211, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSSVAHLAR ANPFNAPHLQ LVHDVSGPRS PPGPPRRSRH LAAAAVEEQY SCEYGSGRFF  60
   61 ILCGLGGIIS CGTTHTALVP LDLVKCRMQV DPQKYKGIFN GFSITLKEDG VRGLAKGWAP 120
  121 TLIGYSMQGL CKFGFYEVFK ALYSNILGEE NTYLWRTSLY LAASASAEFF ADIALAPMEA 180
  181 AKVRIQTQPG YANTLREAVP KMYKEEGLNA FYKGVAPLWM RQIPYTMMKF ACFERTVEAL 240
  241 YKFVVPKPRS ECTKAEQLVV TFVAGYIAGV FCAIVSHPAD SVVSVLNKEK GSTASQVLQR 300
  301 LGFRGVWKGL FARIIMIGTL TALQWFIYDS VKVYFRLPRP PPPEMPESLK KKLGLTE

Type	Start	End	Confidence
Cytoplasmic	1	257	0.66
Transmembrane Helix	258	277	0.71
Non-Cytoplasmic	278	308	0.67
Transmembrane Helix	309	328	0.90
Cytoplasmic	329	357	0.64