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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|47934042
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPCLSTQLI DGDGVFNVSG LESFMKEVKL AECGLSYAVV SIMGPQSSGK STLLNHLFRT  60
   61 NFREMDAFRG RSQTTKGIWM AKAQNIEPCT LVMDLEGTDG RERGEDDTAF EKQSALFALA 120
  121 VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTMLFVIRDK SKTPLENLEP 180
  181 ILREDIQKIW DGVPKPHAHK DTPLSEFFNV QVVALNSYEE KEELFREQVS NLRDRFQQSI 240
  241 APGGLAGDRR GVVPASGFSF SSQQFWKVIK ENKDLDLPAH KVMVATVRCE EIGYEKVATF 300
  301 TADEEWQQFE EAVQSDYVPG FGKKISSLLD RCLSEYDMEA IYFDEGVRTS KRHQLESKLL 360
  361 QLVNPAYQSL LGHLRTRTLE AFKESFDKAV EKEGFAVAAR DSTQIFLEKF DKGSEDATIQ 420
  421 QVNWDPSKVK DKLKRDIEAH VVSVRATKLS ELCATYEGKL TKALAEPVEA LLDSASEDTW 480
  481 PAIRKLLQRE TKAAVSGLES AISTFELDEA TEKELLLRLE NHGRSVVESK AREEAARILI 540
  541 RMKDRFSTLF SRDADSMPRV WTGKEDIKAI TKTARSASMK LLSTMAAIRL EEDGDNIDTT 600
  601 LSLALVDAAR PGTTDRSIQS LDPLASSSWE RVPEERTLIS PVQCKSLWRQ FKAETEYTVT 660
  661 QAIAAQEANK RNNNWLPPPW ALAAMAVLGF NEFMTLLRNP FYLAVMFVVF LVGKAIWVQL 720
  721 DIANEFRNGF LPALLSLSTK FVPTIMNILK RLADEGAAPA APERQRETEL QPRNNSSNSN 780
  781 VTSAGSSSLT SSENGPEYSS PVAQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle