YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60499140, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVEQTAPA PDGSSNGSDL VNGTAGRFVS SAEGTALAYG SLLLMALLPI FFGALRSVGC  60
   61 SKSKGSSDMP ETITSRDAAR FPIIASCTLF GLYLFFKVFS QEYVNMLLSM YFFVLGILAL 120
  121 SHTMSPFMCR VFPANLSNKQ YQLLFTQGSG ESKEEIVNYE FDTKDLICLC ISSVVGVWYV 180
  181 LKKHWIANNL FGLAFALNGV ELLHLNNVST GCILLGGLFV YDVFWVFGTN VMVTVAKSFE 240
  241 APIKLVFPQD LLEKGLGASN FAMLGLGDIV IPGIFIALLL RFDVSLKKNT RTYFYTSFLA 300
  301 YIFGLGLTIF VMHTFKHAQP ALLYLVPACV GFPVLVALVK GELTEMFRYE EETPSKEETT 360
  361 ESEKDK

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.80
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	77	0.77
Transmembrane Helix	78	99	0.88
Non-Cytoplasmic	100	106	0.66
Transmembrane Helix	107	129	0.84
Cytoplasmic	130	202	0.78
Transmembrane Helix	203	225	0.80
Non-Cytoplasmic	226	260	0.87
Transmembrane Helix	261	282	0.90
Cytoplasmic	283	291	0.89
Transmembrane Helix	292	313	0.93
Non-Cytoplasmic	314	320	0.77
Transmembrane Helix	321	339	0.96
Cytoplasmic	340	366	0.93