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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19527793
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLFLWWIAG YIILVSGGTN PPLYALDQPN VARCLDYCHL KNLRFLLCVD ADGQLSHNPY  60
   61 KDCNRGFCKA EDFELEYETD EGKEKRINRV EKTRVGQKAN LRDLCLNERG ISIRRRCQIR 120
  121 NGNRVWQSLD HVTCRSAPEL SSSINLLAVK SPPDMISQLS NLLTQTQEKL AAADVFSISE 180
  181 IFDSLVKKPE RNAAVVGDLM KICQKVMSTD NETLRVSADA NATNALLSNF EDYLDELSPT 240
  241 ILKLNTTIFA NSTEFTFHPL FDMGVIVLKT SELRVFFIDP EVRNVSGIVN FSGGNMSHFE 300
  301 MLHLSDNEED IRAMKNLESA VFIPEKLWTQ LKRKGASYLV FKVYTRDSLF VETEEEIKRR 360
  361 PTSNVISITI PGLNDTKLPG KLPFFLRNAK ANETQFEGGC GYWNYETWLS DGISTSGGGS 420
  421 LEASSHPVIL CHADHLTQFT FLLGVSKMQA GLDTNEDDHS LDVITNVGLT LSLLGLLMIF 480
  481 ITAAVFKSFR TLASTKILLN LCAALGLQLL FFLILSQSHL LEQLEQSESE RCTLVGAVMQ 540
  541 YLLLVVFSWM FIIGFLQYQR YVRVIGVNHP RHYILMSAVA AWTLPLIPTL LVVFLEPGSY 600
  601 RPNNSSMDYP ILCYPSGYGL SLGVILPIGL ITVANAILVG YISWSVYTAL FKRDLIFKQL 660
  661 GLFVLLFFLL GITWIFGLCT YFDFGRIFAY LFCLTATLQG FVLFLYFIVF NKENQRAWLG 720
  721 LCCNSSKKRN QQTIQMPTDS ILQGLSHSST NSTSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle