YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27372091
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFPRRYQST QWGSWSTLKL LVWTVLCCDF LAHHGTHSWT YQYSEKSMNW ENARKFCKEN  60
   61 YTDLVAIQNK REIEYLEKTL PKNPTYYWIG IRKIGNIWTW VGTNKPLTKE AENWGAGEPN 120
  121 NKKSKEDCVE IYIKRERDSG KWNDDACHKR KAALCYTASC QSDSCSGHGE CVETINNHTC 180
  181 NCDVGFYGPQ CQYVVQCGPL KAPELGTMDC THPLGDFSLH SQCAFNCSEG TELLGIEETH 240
  241 CGPYGNWSSL EPVCQVSQCQ PLAVPDLGTV ECSHPLANFS FTSTCTFSCL EDTDLIGERT 300
  301 TVCGSAGVWS NPSPICQKAD SSFSKIKEGD YNPLFIPVAV MVTAFSGLAF IIWVARRLKK 360
  361 GKESQKRMDD PY

Type	Start	End	Confidence
Signal Peptide	1	32	0.50
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	333	0.98
Transmembrane Helix	334	355	0.94
Cytoplasmic	356	372	0.96