YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27542787
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNKRILCR VGLDVLILLC AGFPILLFFL LGEPYKRGFF CDDESLKHPF HDSTVRNWML  60
   61 YFIGAVIPVG VILIVEVIIS QNKAKQDNGN ATSRRYVFMN YELPDWMIEC YKKIGIYAFG 120
  121 AVLSQLTTDI AKYSIGRLRP HFIAVCQPRM ADGSTCDDAI NAGKYIQEFT CKGVGSSARM 180
  181 LKEMRLSFPS GHSSFTFFAM VYLALYLQAR MTWRGSKLLR HLLQFLFIMV AWYTALSRVS 240
  241 DYKHHWSTVL AGSLIGSISA LVVANYVSDL FQKPNTKPYL GRTVQDMNAS PAQAITITTN 300
  301 VDGTAGPGSI ATMVSKGEEL FTGVVPILVE LDGDVNGHKF SVSGEGEGDA TYGKLTLKFI 360
  361 CTTGKLPVPW PTLVTTLTYG VQCFSRYPDH MKQHDFFKSA MPEGYVQERT IFFKDDGNYK 420
  421 TRAEVKFEGD TLVNRIELKG IDFKEDGNIL GHKLEYNYNS HNVYIMADKQ KNGIKVNFKI 480
  481 RHNIEDGSVQ LADHYQQNTP IGDGPVLLPD NHYLSTQSAL SKDPNEKRDH MVLLEFVTAA 540
  541 GITLGMDELY K

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	30	0.96
Non-Cytoplasmic	31	57	0.95
Transmembrane Helix	58	79	0.93
Cytoplasmic	80	187	0.96
Transmembrane Helix	188	209	0.89
Non-Cytoplasmic	210	217	0.86
Transmembrane Helix	218	236	0.94
Cytoplasmic	237	245	0.80
Transmembrane Helix	246	267	0.92
Non-Cytoplasmic	268	551	0.94