YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23393789
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPNAAPPTP ALTESLLASA NIDGANPKVL HEATTGVLFE QDAETIDGGL VKDIERLKKA  60
   61 EKRKLKLVWR NIIAFGYLHL AALYGAYLMF TSAKWQTIVF AFALYVVSGL GITAGAHRLW 120
  121 AHRSYKAKWP LRLILMIFNT IAFQDAAYHW ARDHRVHHKY SETDADPHNA TRGFFFSHIG 180
  181 WLLCKKHPEV KAKGKGVDLS DLKADPIIMF QKKYYLILMP ILCFILPTMI PMYGWNESFM 240
  241 NSWFVATMFR WCFILNITWL VNSAAHKFGG KPYDKYINPA ENKSVAILAF GEGWHNYHHV 300
  301 FPWDYKTAEF GNYSMNMTTG FIDFFAKIGW AYDLKTVSAD IIKKRVKRTG DGSHATWGWG 360
  361 DKDQPKDEID NAIIINKKDE

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	88	0.93
Non-Cytoplasmic	89	97	0.78
Transmembrane Helix	98	120	0.92
Cytoplasmic	121	213	0.82
Transmembrane Helix	214	235	0.91
Non-Cytoplasmic	236	242	0.79
Transmembrane Helix	243	262	0.88
Cytoplasmic	263	380	0.92